Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000142-TA|BGIBMGA000142-PA|IPR011009|Protein
kinase-like, IPR000719|Protein kinase, IPR000183|Orn/DAP/Arg
decarboxylase 2
         (93 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    53   5e-10
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    46   8e-08
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   1.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   4.4  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
          protein.
          Length = 149

 Score = 53.2 bits (122), Expect = 5e-10
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 15 LVRKRCGIDEGKLYAMKVLKKASIVQKLKTAEHTRTERQVLEAVRECPFLVTLHYAFQTD 74
          ++ +R G DE  LYA+K+LKK  I+Q     E T  E++VL    + PFLV LH  FQT 
Sbjct: 1  MLAERKGTDE--LYAIKILKKDIIIQD-DDVECTMVEKRVLALSTKPPFLVQLHSCFQTM 57

Query: 75 AKLHLILESSNNG 87
           +L+ ++E  N G
Sbjct: 58 DRLYFVMEYVNGG 70


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 46.0 bits (104), Expect = 8e-08
 Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 4/91 (4%)

Query: 2   ISPLFVSAYGKVFLVRKRCGIDEGKLYAMKVLKKASIVQKLKTAEHTRTERQVLEAVREC 61
           ++ L V  +G+V LV+     D  + +A+K +KKA IV+  +  +H  +E++++    +C
Sbjct: 370 LATLGVGGFGRVELVQ--IAGDSSRSFALKQMKKAQIVET-RQQQHIMSEKRIMGEA-DC 425

Query: 62  PFLVTLHYAFQTDAKLHLILESSNNGKGWSI 92
            F+V L   F+    L++++E+   G+ W++
Sbjct: 426 DFVVKLFKTFKDRKYLYMLMEACLGGELWTV 456


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 9/34 (26%), Positives = 22/34 (64%)

Query: 22  IDEGKLYAMKVLKKASIVQKLKTAEHTRTERQVL 55
           +++GKL   K ++ ++ + K+K  + T  E+++L
Sbjct: 254 LEDGKLKPNKKVRISNEMSKVKVIDMTGPEQRIL 287


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 72  QTDAKLHLILESSNNGKGWSI 92
           Q   K+   +  + NG+GW +
Sbjct: 490 QRGTKMQFCIFRTANGRGWGV 510


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.137    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,858
Number of Sequences: 429
Number of extensions: 677
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 93
length of database: 140,377
effective HSP length: 48
effective length of query: 45
effective length of database: 119,785
effective search space:  5390325
effective search space used:  5390325
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)