Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000141-TA|BGIBMGA000141-PA|undefined
         (174 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   9.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   9.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   9.8  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 112 SSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLVLSIYSYENTRLTEIE 164
           S + + +  T     R   D  L+D S    R +D    +  S E  ++TE+E
Sbjct: 237 SPNCDKLSSTEQLFIRPMYDAFLIDQSLALNRGRDENPRTYRSDEGPQITELE 289


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 112 SSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLVLSIYSYENTRLTEIE 164
           S + + +  T     R   D  L+D S    R +D    +  S E  ++TE+E
Sbjct: 470 SPNCDKLSSTEQLFIRPMYDAFLIDQSLALNRRRDENPRNYRSDEGPQITELE 522


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 112 SSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLVLSIYSYENTRLTEIE 164
           S + + +  T     R   D  L+D S    R +D    +  S E  ++TE+E
Sbjct: 470 SPNCDKLSSTEQLFIRPMYDAFLIDQSLALNRRRDENPRNYRSDEGPQITELE 522


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,690
Number of Sequences: 317
Number of extensions: 1070
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 174
length of database: 114,650
effective HSP length: 53
effective length of query: 121
effective length of database: 97,849
effective search space: 11839729
effective search space used: 11839729
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.8 bits)
S2: 40 (20.2 bits)