Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000141-TA|BGIBMGA000141-PA|undefined
         (174 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41574| Best HMM Match : DUF164 (HMM E-Value=0.47)                   29   2.8  
SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_55306| Best HMM Match : DUF361 (HMM E-Value=3)                      27   8.5  

>SB_41574| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 361

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 127 RDSIDWNLVDASKIRKRCKDRLVLSIYSYENTRLTEIENLRLNYQYNK 174
           R S++W     +K     K++L LS    E  +  E+ENLR +YQ  K
Sbjct: 149 RSSLEWEAKQRTKEVNYMKEQLRLS----EERQQVELENLRTSYQVAK 192


>SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 578

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)

Query: 15  HESGYYEGSDQEGSMECGC 33
           H SGY   SD     ECGC
Sbjct: 541 HHSGYASSSDDSSDYECGC 559


>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2324

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 100 EESAPVAGPSKRSSSVELIGGTVPAPARDSIDWNL 134
           E+SAP +G ++       +GG  P P+ ++I+W L
Sbjct: 298 EDSAPESGQAEDEEE-GAVGGPAPGPSGNAIEWIL 331


>SB_55306| Best HMM Match : DUF361 (HMM E-Value=3)
          Length = 151

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 114 SVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLVLSIYSYENTRLTE 162
           S +LIGG +     D ++W + +AS    R   ++  +   +ENT L E
Sbjct: 91  SKKLIGGRINKKI-DELNWKISNASSKTLRVLKKIETNFGQFENTSLGE 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,355,321
Number of Sequences: 59808
Number of extensions: 178381
Number of successful extensions: 465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 5
length of query: 174
length of database: 16,821,457
effective HSP length: 77
effective length of query: 97
effective length of database: 12,216,241
effective search space: 1184975377
effective search space used: 1184975377
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)