GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000141-TA|BGIBMGA000141-PA|undefined
         (174 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    25   4.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   4.7  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   6.2  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   6.2  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 84  KSVEIVECSAPLKDIREESAPVAGPSKRSSSVELIGGTV 122
           K V+++      K IRE    VA  S  +++ E++GG V
Sbjct: 23  KGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRV 61


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 104  PVAGPSKRSSSVELIGGTVPAPARDSIDW-NLVDASKIRKRC 144
            P+AG + +SS+++  G TV  P  D++ +   ++ S  + RC
Sbjct: 2475 PIAGKTLKSSALKYAGNTV-IPTLDTVRYAEFLNFSLTKNRC 2515


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 137 ASKIRKRCKDRLVLSIYSYENTRLTEIENLRLNYQYNK 174
           +S I    KD L    Y+Y+  R T+IE+L  +   +K
Sbjct: 412 SSNIPADVKDSLSADDYAYDTKRKTQIEDLEEDQNKSK 449


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 123 PAPARDSIDWNLVDASKIRKRCKDRLVLSIYSYENTRLTEIENLRL 168
           P+  R+++    V+AS           L +YSYEN RL  I +  +
Sbjct: 10  PSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANI 55


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,457
Number of Sequences: 5004
Number of extensions: 23335
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 4
length of query: 174
length of database: 2,362,478
effective HSP length: 68
effective length of query: 106
effective length of database: 2,022,206
effective search space: 214353836
effective search space used: 214353836
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)