Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000141-TA|BGIBMGA000141-PA|undefined
(174 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0465 - 9594866-9595672,9596036-9597496 29 1.6
06_02_0289 + 13825103-13825510,13825651-13826112,13826189-138270... 29 2.1
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 29 2.7
10_08_0897 - 21419639-21420633,21420826-21421153 29 2.7
10_07_0178 - 13856391-13856458,13857231-13858211,13858848-13859175 28 3.6
08_02_1575 - 27961468-27961665,27962002-27962040,27963213-27963341 28 3.6
08_01_0348 - 3076395-3078236 28 3.6
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 28 3.6
10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538 28 4.8
09_01_0073 - 1057560-1058043,1058199-1058385,1058754-1059062,105... 28 4.8
06_02_0162 + 12466027-12466354,12466894-12467546 28 4.8
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 27 6.3
10_06_0096 + 10612910-10613132,10613195-10613361 27 6.3
04_04_0178 - 23337801-23337896,23337999-23338067,23338171-233382... 27 8.3
>09_02_0465 - 9594866-9595672,9596036-9597496
Length = 755
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 92 SAPLKDIREESAPVAGPSKRSSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKD 146
+AP++D+ +A V+G ++ E P R+++ WN + A+ I++R D
Sbjct: 249 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMD 303
>06_02_0289 +
13825103-13825510,13825651-13826112,13826189-13827021,
13827104-13827274,13828025-13828076
Length = 641
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 87 EIVECSAPLKDIR--EESAPVAGPSKRSSSVELIGGTVPAPARD 128
+I + AP+K R + S P+ KR E +G P P RD
Sbjct: 421 DIAQSLAPIKTTRKADSSPPLVKGQKRERDKEKVGELAPVPKRD 464
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 90 ECSAPLKDIREESAPVAGPSKRSSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLV 149
E S K +E+S + P + +E I P +D L + + ++L+
Sbjct: 288 ELSRIKKQKKEKSLAIETPRTQEIKIEQIKSEEPREEIQKLDKVLSEEEQWE--VNEKLL 345
Query: 150 LSIYSYENTRLTEIENL 166
L Y EN + EIEN+
Sbjct: 346 LESYEEENNLIEEIENI 362
>10_08_0897 - 21419639-21420633,21420826-21421153
Length = 440
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 90 ECSAPLKDIREESAPVAGPSKRSSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLV 149
E S K +E+S + P + +E I P +D L + + ++L+
Sbjct: 288 ELSRIKKQKKEKSLAIETPRTQEIKIEQIKSEEPREEIQKLDKVLSEEEQWE--VNEKLL 345
Query: 150 LSIYSYENTRLTEIENL 166
L Y EN + EIEN+
Sbjct: 346 LESYEEENNLIEEIENI 362
>10_07_0178 - 13856391-13856458,13857231-13858211,13858848-13859175
Length = 458
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 90 ECSAPLKDIREESAPVAGPSKRSSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLV 149
E S K +E+S + P + +E I P +D L + + ++L+
Sbjct: 140 ELSRIKKQKKEKSLVIETPRTQEIKIEQIKSEEPREEIQKLDKVLSEEEQWE--VNEKLL 197
Query: 150 LSIYSYENTRLTEIENL 166
L Y EN + EIEN+
Sbjct: 198 LESYEEENNLIEEIENI 214
>08_02_1575 - 27961468-27961665,27962002-27962040,27963213-27963341
Length = 121
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 92 SAPLKDIREESAPVAGPSK-RSSSVELIGGTVPAPARDSIDW 132
S P D++ E P AG S ++ + LI G V +I W
Sbjct: 66 STPAADVKAEGGPTAGASTVKNKNYTLIAGAVGVLGASAIAW 107
>08_01_0348 - 3076395-3078236
Length = 613
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 92 SAPLKDIREESAPVAGPSKRSSSVELIGGTVPAPARDSIDWN 133
S P++D+ + V+G SK + E + P R+S+ WN
Sbjct: 105 SMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWN 146
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 98 IREESAPVAGPSKRSSSVELIGGTVPAPARDSIDWNLVDASK 139
+REE VAG +R+S VE GG+ P R N+ D+ +
Sbjct: 60 VREE-LEVAGDGRRASGVEAPGGSGPGGERTMAPANIDDSRR 100
>10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538
Length = 327
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 95 LKDIREESAPVAGPSKRSSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLVLSIYS 154
L+ +E+S + P + +E I P +D L + + ++L+L Y
Sbjct: 162 LRKKKEKSLAIETPRTQEIKIEQIKSEEPREEIQKLDKVLSEEEQWE--VNEKLLLESYE 219
Query: 155 YENTRLTEIENL 166
EN + EIEN+
Sbjct: 220 EENNLIEEIENI 231
>09_01_0073 -
1057560-1058043,1058199-1058385,1058754-1059062,
1059427-1060269,1061572-1062552,1063189-1063516
Length = 1043
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 90 ECSAPLKDIREESAPVAGPSKRSSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLV 149
E S K +E+S + P + +E I P +D L + + ++L+
Sbjct: 140 ELSRINKQKKEKSLVIETPRTQEIKIEQIKSEEPREEIQKLDKVLSEEEQWE--VNEKLL 197
Query: 150 LSIYSYENTRLTEIENL 166
L Y EN + EIEN+
Sbjct: 198 LESYEEENNLIEEIENI 214
>06_02_0162 + 12466027-12466354,12466894-12467546
Length = 326
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 90 ECSAPLKDIREESAPVAGPSKRSSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLV 149
E S K +E+S + P + +E I P D L + + ++L+
Sbjct: 172 ELSRIKKQKKEKSLAIETPRTQEIKIEQIKSKEPREEIQKFDKVLSEEEQWE--VNEKLL 229
Query: 150 LSIYSYENTRLTEIENL 166
L Y EN + EIEN+
Sbjct: 230 LESYEEENNLIEEIENI 246
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 90 ECSAPLKDIREESAPVAGPSKRSSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLV 149
E S K +E+S + P + +E I P +D L + + ++L+
Sbjct: 140 ELSRIKKQKKEKSLVIEIPRTQEIKIEQIKSEEPREEIQKLDKVLSEEEQWE--VNEKLL 197
Query: 150 LSIYSYENTRLTEIENL 166
L Y EN + EIEN+
Sbjct: 198 LESYEEENNLIEEIENI 214
>10_06_0096 + 10612910-10613132,10613195-10613361
Length = 129
Score = 27.5 bits (58), Expect = 6.3
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 54 AQKHKKLPPKKVRTEPPXXXXXXXXXXXXDKSVEIVECSAPLKDIREESAPVAGPSKRSS 113
A K K PP T D+ P K I E P PS ++
Sbjct: 45 AAKWKAYPPLNTETIHHAQVRDGYARVSVDREARGSFVQWPKKHIIIEIVP--HPSDKAP 102
Query: 114 SVELIGGTVPAPARDSIDWNL-VDASK 139
V + P ARD + W+L +D K
Sbjct: 103 KVPALPSCPPIAARDDLSWDLGIDLDK 129
>04_04_0178 -
23337801-23337896,23337999-23338067,23338171-23338253,
23338694-23338772,23338956-23339120,23339230-23339274,
23339370-23339444,23340135-23340311,23340398-23340721,
23340829-23340897
Length = 393
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 91 CSAPLKDIREESAPVAGP-SKRSSSVELIGGTVPAPARDSIDWNLVDASKIRKR 143
C+ D + A + P S ++ G PAP D+ D VD +IR+R
Sbjct: 18 CARAETDSEDAVATTSSPHSAEAAGAAEQGNGAPAPVADAADVEGVDGIRIRRR 71
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.128 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,769,623
Number of Sequences: 37544
Number of extensions: 171393
Number of successful extensions: 320
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 14
length of query: 174
length of database: 14,793,348
effective HSP length: 77
effective length of query: 97
effective length of database: 11,902,460
effective search space: 1154538620
effective search space used: 1154538620
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)
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