GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000141-TA|BGIBMGA000141-PA|undefined
         (174 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033093-1|AAH33093.1|  958|Homo sapiens Treacher Collins-France...    33   0.53 
BC016144-1|AAH16144.1| 1414|Homo sapiens Unknown (protein for IM...    33   0.53 
BC014559-1|AAH14559.1|  958|Homo sapiens Treacher Collins-France...    33   0.53 
BC011764-1|AAH11764.1|  958|Homo sapiens Treacher Collins-France...    33   0.53 
AY460334-1|AAR87774.1| 1488|Homo sapiens treacle major isoform p...    33   0.53 

>BC033093-1|AAH33093.1|  958|Homo sapiens Treacher
           Collins-Franceschetti syndrome 1 protein.
          Length = 958

 Score = 33.1 bits (72), Expect = 0.53
 Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 7/122 (5%)

Query: 11  KKPEHESGYYEGSDQEGSMECGCPXXXXXXXXXXXTKLKRRHSAQKHKKLPPKKVRTEPP 70
           KKPE ES   E S++    E   P             L+ R ++   K  P K     PP
Sbjct: 264 KKPEEES---ESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGKGATPAPP 320

Query: 71  XXXXXXXXXXXXDKSVEIVECSAPLKDIREESAPVAG---PSKRSSSVELIGGTVPAPAR 127
                        K  E  E S+      EE  P A     +K S     + G   APA+
Sbjct: 321 GKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQV-GAASAPAK 379

Query: 128 DS 129
           +S
Sbjct: 380 ES 381


>BC016144-1|AAH16144.1| 1414|Homo sapiens Unknown (protein for
           IMAGE:3921754) protein.
          Length = 1414

 Score = 33.1 bits (72), Expect = 0.53
 Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 7/122 (5%)

Query: 11  KKPEHESGYYEGSDQEGSMECGCPXXXXXXXXXXXTKLKRRHSAQKHKKLPPKKVRTEPP 70
           KKPE ES   E S++    E   P             L+ R ++   K  P K     PP
Sbjct: 264 KKPEEES---ESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGKGATPAPP 320

Query: 71  XXXXXXXXXXXXDKSVEIVECSAPLKDIREESAPVAG---PSKRSSSVELIGGTVPAPAR 127
                        K  E  E S+      EE  P A     +K S     + G   APA+
Sbjct: 321 GKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQV-GAASAPAK 379

Query: 128 DS 129
           +S
Sbjct: 380 ES 381


>BC014559-1|AAH14559.1|  958|Homo sapiens Treacher
           Collins-Franceschetti syndrome 1 protein.
          Length = 958

 Score = 33.1 bits (72), Expect = 0.53
 Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 7/122 (5%)

Query: 11  KKPEHESGYYEGSDQEGSMECGCPXXXXXXXXXXXTKLKRRHSAQKHKKLPPKKVRTEPP 70
           KKPE ES   E S++    E   P             L+ R ++   K  P K     PP
Sbjct: 264 KKPEEES---ESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGKGATPAPP 320

Query: 71  XXXXXXXXXXXXDKSVEIVECSAPLKDIREESAPVAG---PSKRSSSVELIGGTVPAPAR 127
                        K  E  E S+      EE  P A     +K S     + G   APA+
Sbjct: 321 GKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQV-GAASAPAK 379

Query: 128 DS 129
           +S
Sbjct: 380 ES 381


>BC011764-1|AAH11764.1|  958|Homo sapiens Treacher
           Collins-Franceschetti syndrome 1 protein.
          Length = 958

 Score = 33.1 bits (72), Expect = 0.53
 Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 7/122 (5%)

Query: 11  KKPEHESGYYEGSDQEGSMECGCPXXXXXXXXXXXTKLKRRHSAQKHKKLPPKKVRTEPP 70
           KKPE ES   E S++    E   P             L+ R ++   K  P K     PP
Sbjct: 264 KKPEEES---ESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGKGATPAPP 320

Query: 71  XXXXXXXXXXXXDKSVEIVECSAPLKDIREESAPVAG---PSKRSSSVELIGGTVPAPAR 127
                        K  E  E S+      EE  P A     +K S     + G   APA+
Sbjct: 321 GKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQV-GAASAPAK 379

Query: 128 DS 129
           +S
Sbjct: 380 ES 381


>AY460334-1|AAR87774.1| 1488|Homo sapiens treacle major isoform
           protein.
          Length = 1488

 Score = 33.1 bits (72), Expect = 0.53
 Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 7/122 (5%)

Query: 11  KKPEHESGYYEGSDQEGSMECGCPXXXXXXXXXXXTKLKRRHSAQKHKKLPPKKVRTEPP 70
           KKPE ES   E S++    E   P             L+ R ++   K  P K     PP
Sbjct: 264 KKPEEES---ESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGKGATPAPP 320

Query: 71  XXXXXXXXXXXXDKSVEIVECSAPLKDIREESAPVAG---PSKRSSSVELIGGTVPAPAR 127
                        K  E  E S+      EE  P A     +K S     + G   APA+
Sbjct: 321 GKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQV-GAASAPAK 379

Query: 128 DS 129
           +S
Sbjct: 380 ES 381


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.310    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,275,705
Number of Sequences: 224733
Number of extensions: 810763
Number of successful extensions: 1335
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 11
length of query: 174
length of database: 73,234,838
effective HSP length: 85
effective length of query: 89
effective length of database: 54,132,533
effective search space: 4817795437
effective search space used: 4817795437
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 62 (29.1 bits)