GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000141-TA|BGIBMGA000141-PA|undefined
         (174 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    29   2.4  
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe...    27   7.3  

>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
           protein T13H2.5a protein.
          Length = 2471

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 96  KDIREESAPVAGPSKRSSSVELIGGTVPAPARDSI 130
           K I+E      G  K+  + ELI G +P P+ DS+
Sbjct: 440 KLIKESKKKPCGRPKKKFAPELIEGDIPTPSEDSL 474


>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
           defective protein 45 protein.
          Length = 1076

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 135 VDASKIRKRCKDRLVLSIYSYENTRLTEIENL 166
           +DA K RK    ++   + SYE  R TEIE +
Sbjct: 548 LDAEKRRKEILKKIEGQVTSYEKNRPTEIERI 579


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.310    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,935,669
Number of Sequences: 27539
Number of extensions: 134747
Number of successful extensions: 281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 2
length of query: 174
length of database: 12,573,161
effective HSP length: 77
effective length of query: 97
effective length of database: 10,452,658
effective search space: 1013907826
effective search space used: 1013907826
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 56 (26.6 bits)