GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000141-TA|BGIBMGA000141-PA|undefined
         (174 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28327.1 68414.m03477 hypothetical protein                          33   0.14 
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c...    29   1.7  
At4g30790.1 68417.m04362 expressed protein                             27   7.0  
At4g03130.1 68417.m00426 BRCT domain-containing protein contains...    27   7.0  
At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containi...    27   7.0  
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains...    27   7.0  

>At1g28327.1 68414.m03477 hypothetical protein
          Length = 284

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 95  LKDIREESAPVAGPSKRSSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLVLSIYS 154
           ++ +R+      G S  S  V++ G T  +   DS+ +   + + IR R KDRL+L I+ 
Sbjct: 63  MRKVRKHVDDDEGWSGGSKKVKVRGLTSSSGDGDSLSYPFENETTIRNREKDRLMLEIFG 122

Query: 155 YENT 158
            E+T
Sbjct: 123 PEST 126


>At1g27750.1 68414.m03391 ubiquitin system component Cue
            domain-containing protein very low similarity to ASC-1
            complex subunit P100 [Homo sapiens] GI:12061187; contains
            Pfam profile PF02845: CUE domain
          Length = 1973

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 104  PVAGPSKRSSSVE--LIGGTVPAPARDSIDWNLVDASKIRKRCKDRLVLSIYSYENTRLT 161
            P+  PS  +SS     +G  V  P  D+  + ++DA K   R ++  +L+ Y Y++    
Sbjct: 1719 PITRPSLPASSASSATVGRFVRKPKDDTPSYKILDARKESDRERNAALLAQYEYDDEYDD 1778

Query: 162  EIENLRLN 169
              ++L L+
Sbjct: 1779 SFDDLGLS 1786


>At4g30790.1 68417.m04362 expressed protein
          Length = 1148

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 97  DIREESAPVAG--PSKRSSSVELIGGTVPAPARDSIDWNLVDASKIRKRCKDRLVL 150
           D+      V+G  P    S V  +    P  AR+ +D N+VD+S++  +  D  +L
Sbjct: 705 DVEGNKTHVSGSEPMDEVSCVSNLTSKQPCKAREGMDENMVDSSQVLSQPLDSSML 760


>At4g03130.1 68417.m00426 BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 765

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 83  DKSVEIVECSAPLKDIREESAPVAGPSKRSSSVELIGGTVPAPARDSIDWN 133
           DK + +     P+   R +S+PV+G     S  + I    P       DW+
Sbjct: 182 DKDLNLSPVDLPVNSCRRKSSPVSGAKGCQSLAKRIMSRSPTRKMSVFDWS 232


>At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 591

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 125 PARDSIDWNLVDASKIR-KRCKDRLVL 150
           P RD++ WN++ +  +R KR +D LVL
Sbjct: 175 PKRDTVSWNVLFSCYLRNKRTRDVLVL 201


>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 451

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 132 WNLVDASKIRKRCKDRLVLSIYSYENTRLTEIENLRLNYQY 172
           +N +    I KR  D+++     Y   R  EIE  R NY +
Sbjct: 36  FNAIQRIPIFKRLSDKILEFFSPYAYIRFREIEGYRYNYAF 76


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,745,128
Number of Sequences: 28952
Number of extensions: 129905
Number of successful extensions: 262
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 6
length of query: 174
length of database: 12,070,560
effective HSP length: 76
effective length of query: 98
effective length of database: 9,870,208
effective search space: 967280384
effective search space used: 967280384
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 56 (26.6 bits)