GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000140-TA|BGIBMGA000140-PA|IPR005612|CBF
         (1096 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      27   0.70 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    24   6.5  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 790 FSGDEDGKDDLSSLFASAEEFSTLLEDTAANKKQG----SSQAVSNTDNS 835
           F  + DG+D+  S     EE S+L++ T + +K G    S++ VS  D+S
Sbjct: 21  FKDEGDGEDEKRSSENLTEEKSSLIDLTESEEKSGGSYSSNKNVSRADHS 70


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 50  WFHQLPEEPVTLPKTLSTEQIEQLRKEATS 79
           W +++P  PV++      E++  L +++TS
Sbjct: 321 WLNEIPTMPVSIKDQTIKEELALLAQQSTS 350


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,172
Number of Sequences: 317
Number of extensions: 8964
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 1096
length of database: 114,650
effective HSP length: 64
effective length of query: 1032
effective length of database: 94,362
effective search space: 97381584
effective search space used: 97381584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)