Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000140-TA|BGIBMGA000140-PA|IPR005612|CBF
(1096 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 115 4e-26
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 33 0.29
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 30 1.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 30 2.0
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 30 2.0
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 29 2.7
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 29 3.6
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 29 3.6
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 28 8.2
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 28 8.2
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|... 28 8.2
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 115 bits (276), Expect = 4e-26
Identities = 101/389 (25%), Positives = 180/389 (46%), Gaps = 48/389 (12%)
Query: 125 GNKQTKRNILKLWYYEDQLKELYGTYVDALNKFAHDTVDANKEKSVSAMSYLLMHHPERE 184
G+K L +W +E LK Y Y+ + + D + K + VS + LL PE+E
Sbjct: 168 GSKNVTDKHLMVWAFESFLKSFYFKYIQIIEALSFDALLFVKSQMVSTIYDLLKAKPEQE 227
Query: 185 KILLTNIINKLGDPSQGVASKVIYHLCQIIYNHPNMKGVVLAEIEKMLFRTNISPRAQYY 244
+ LL +INKLGD +ASK Y + Q+ +HP MK V+ EIE+ +F + S + YY
Sbjct: 228 QNLLKLLINKLGDKENKIASKASYSILQLEASHPAMKLVITKEIERFIFAPSTSRTSCYY 287
Query: 245 GVCFLNQFYLGKDDSKVAESLIRIYFSFFKA---SIKKGEI------DSRLMSAILTGVK 295
+ LNQ L VA LI IYF FF +++K E+ + + + + K
Sbjct: 288 TLITLNQTVLTHKQVDVANLLIEIYFVFFTKLLFALEKEEVADAPTLEKKSLQSDSKNKK 347
Query: 296 RAYPFADKERLTETQDHIDS---------IHRLVHLAGIN---ISVHALALLFQISDAST 343
D++ E +++++S ++R A +N H L AS
Sbjct: 348 SQKRKKDEDLRKEAEENVNSRVISAVLTGVNRAYPFAEVNSEKFDKHMNTLFAITHTASF 407
Query: 344 GTSDRYYSALYKKLTNSDILN----------------TTHT--ALLFSLVYKSLKQDKNI 385
TS + +++ + D ++ TT + +L +L+YKSL D NI
Sbjct: 408 NTSVQVLMLIFQASASRDFISDRYYKSLYESLLDPRLTTSSKQSLYLNLLYKSLIIDNNI 467
Query: 386 PRVVAFVKRLLQLCCYVLPAQACGMIFLLSRVLKDSSKKEAIKLVWNKREVKEEIKSEDV 445
PRV AF+KR++Q+ + P G+ ++ +++ ++ A++ ++ E+ D
Sbjct: 468 PRVRAFIKRMVQVSAWQQPPLVTGLFHVMHQLVIATT---ALRSMFTNAEI------HDF 518
Query: 446 IGPQQDTTENGTDKDGAEPTDIVQDEEVK 474
G +++ ++ + D +E + D++ K
Sbjct: 519 DGDEEEVFKDVEEDDVSEDQKVDSDKDGK 547
Score = 64.5 bits (150), Expect = 8e-11
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 534 LHDRSETETKIQLKKTINMDKVASAYNPLGRSPQHAGAELSAYTELLLLSRHFHPTVQLF 593
L D+ + +++ K +Y+ R PQ++ A+ S E+ HFHPTV L
Sbjct: 548 LSDKQSHSAYVVGNVSVSTKKEHLSYDGRKRDPQYSNADGSCLWEIHPFLNHFHPTVSLL 607
Query: 594 AKKMLSDQLIQYSGDPLKDFSGI-RFLDRFVFKNPKKRTENQEEDGVKKIKGSHPKFAVR 652
AK ++ + I G P + FLD+F ++NPKK + ++ + G K V
Sbjct: 608 AKSLVYGEKI--LGKPNLSLHTLNHFLDKFAYRNPKKSAAARGHSIMQPLAGGLSKGYV- 664
Query: 653 KNYTARGVKSLRVNSISYLNEDASKIPVDEKFLYDFLQKR 692
T GV +NS + ++ +IPVDE F Y F +
Sbjct: 665 PGSTYSGVP---MNSEQFTSKKQEEIPVDELFFYRFFNDK 701
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 32.7 bits (71), Expect = 0.29
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 4/134 (2%)
Query: 72 QLRKEATSALHGDTLAYETNAXXXXXXXXXXXPDVKLRTFEQHPLGHLDEMTSGNKQTKR 131
Q+ K S D AY+ N + HP + + + + NK+ +
Sbjct: 69 QMVKHILSVFDVDVNAYDKNKNTPLHLAAMAGRQDIVEALLLHPDINYNLVNANNKKAYQ 128
Query: 132 NILKLWYYEDQLKELYGTYVDALNKFAHDTVDANKEKSVSAMSYLLMHHPEREKILLTNI 191
+ D +K Y TY + A + A KE+++ +M YL+ H+ + I L +
Sbjct: 129 -VATSPQLMDFMKGFYVTYT---KETAREFKKAFKERNLESMDYLMRHNEFNDAIDLNEV 184
Query: 192 INKLGDPSQGVASK 205
K G VA+K
Sbjct: 185 DIKTGQTYLHVATK 198
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 130 KRNILKLWYYEDQLKELYGTYVDALNKFAHDTVDANKEKSV--SAMSYLLMHHP 181
K+++ Y++ +KE YVD NKF+++T+ + ++ S +++L +P
Sbjct: 71 KKHLEASRYFQTHVKEFMKEYVDRENKFSNETISKSSAAALMTSMENFILFTNP 124
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 938 TSVDTARSSVDTPSVLPDFNIPTPMNTPVNEITPEILLPISETPKIPTETIRKAATLLKL 997
+ +T V + S + P P TP E+ ++TP P ++KAA +
Sbjct: 156 SKTETPAPKVTSESTKKETAAPPPQETPTKSADAEL----AKTPSAPAAALKKAAEAAEP 211
Query: 998 SIVKKDEDDV 1007
+ V +D D+
Sbjct: 212 ATVTEDATDL 221
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 415 SRVLKDSSKKEAIKLVWNKREVKEEIKSEDVIGPQQDTTENGTDKDGAEPTDIVQDEE 472
SR LK+ KKE + V KRE K+ K + G T+ N D G E + D E
Sbjct: 335 SRALKEKRKKEQDENVRRKRENKKRRKDQKKEG---ITSSNKNDDSGNEGSSAYSDTE 389
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 625 KNPKKRTENQEEDGVKKIKGSHPKFAVRKNYTARGVKSLRVNSISYLNED 674
K P+KR ++Q+E KK KG + V S N S L E+
Sbjct: 62 KKPEKRKKDQKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEE 111
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 1/128 (0%)
Query: 791 SGDEDGKDDLSSLFASAEEFSTLLEDTAANKKQGSSQAVSNTDNSSLKQLAWEDKRNNWI 850
+ + D SS F + N ++ + NTD+S++ A +
Sbjct: 349 ANSSNSNDGSSSKSLDVGSFVNAFKQLNVNDNSSNNNSSGNTDSSTIGYAAVFAAAGKFF 408
Query: 851 KGYNKKILGNNKSGGKFKHKMADRKKTAAKNFGGKIKMQENKFAGKGKRKGGTANGPENL 910
++ + NKS + +++ ++ AKN K N+ + G + +
Sbjct: 409 SQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQSQNGNSQNSGNPVS-QAI 467
Query: 911 DLPDDTFR 918
DL F+
Sbjct: 468 DLAKSLFQ 475
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 926 LIGENVTVSERVTSVDTARSSVDTPSVLPDFNIPTP-MNTPVNEITPEILLPISETPKIP 984
++G ++ + R T T ++ TP+V +PT M TPV E T ++ TP +
Sbjct: 236 VVGRSMVSTIRTT---TPMEAMITPTV-ETTTLPTAAMTTPVEETTTTPMVETMITPTVV 291
Query: 985 TETIRKAATLLKLSIV 1000
T T T++ ++V
Sbjct: 292 TTTTPMVETMITPTVV 307
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 559 YNPLGRSPQHAGAELSAYTELLLLSRHFHPTVQLFAKKML 598
YNP P + + + E LL H+ P V AK++L
Sbjct: 703 YNPFIEDPDLSNSSTAVLYEPFLLKNHYSPAVSQSAKELL 742
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 192 INKLGDPSQGVASKVIYHLCQIIYNHPNM 220
+NKLGD S G+ SK + L I+N N+
Sbjct: 178 LNKLGDLSNGIRSKALPTLSNTIHNVLNV 206
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 416 RVLKDSSKKEAIKLVWNKREVKEEIKSEDVIGPQQDTTE 454
R L+ + +K I+ W KR +K E +S ++ P+Q + E
Sbjct: 125 RKLEKAERK--IRAKWEKRTIKAEYESSKLVQPEQKSYE 161
>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 290
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 318 RLVHLAGINISVHALALLFQIS 339
R VH+ GI +HA+A LF I+
Sbjct: 137 RYVHITGIGFVIHAIAALFVIT 158
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,629,812
Number of Sequences: 5004
Number of extensions: 194406
Number of successful extensions: 492
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 18
length of query: 1096
length of database: 2,362,478
effective HSP length: 80
effective length of query: 1016
effective length of database: 1,962,158
effective search space: 1993552528
effective search space used: 1993552528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)
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