Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000140-TA|BGIBMGA000140-PA|IPR005612|CBF
(1096 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124... 125 2e-28
12_02_1261 + 27410921-27413401 32 2.2
07_01_0521 + 3867922-3867967,3868282-3868544,3868680-3868744,386... 31 3.8
06_03_0152 + 17287133-17287490,17288541-17288734,17289349-172895... 31 3.8
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 31 5.1
12_01_0056 + 482987-483019,483153-483362,483503-483604,484601-48... 31 6.7
05_05_0088 + 22303074-22303253,22303401-22303478 31 6.7
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 31 6.7
02_02_0489 + 10869482-10871218 31 6.7
03_04_0206 - 18493178-18495310 30 8.9
>09_01_0087 +
1245890-1246565,1247409-1247484,1247774-1247893,
1248927-1249002,1250767-1250835,1251019-1251099,
1251298-1251369,1251600-1251692,1251904-1252083,
1252558-1252641,1252729-1252872,1253089-1253178,
1255982-1256064,1256140-1256421,1256722-1256959,
1258307-1258957
Length = 1004
Score = 125 bits (302), Expect = 2e-28
Identities = 68/173 (39%), Positives = 100/173 (57%), Gaps = 7/173 (4%)
Query: 104 PDVKLRTFEQHPLGHLDEMTSGNKQTKRNILKLWYYEDQLKELYGTYVDALNKFAHDTVD 163
PD KL++ QHPL L E G ++L WY+ED LK+ Y +V AL D +
Sbjct: 254 PDRKLKSLIQHPLDILPETKDGY-----SLLLFWYWEDCLKQRYEKFVIALEDALKDMLP 308
Query: 164 ANKEKSVSAMSYLLMHHPEREKILLTNIINKLGDPSQGVASKVIYHLCQIIYNHPNMKGV 223
K+K++ + LL E+E+ LLT ++NKLGDP + AS Y L ++ HPNMK V
Sbjct: 309 NLKDKAMKTVFILLKEKAEQERRLLTALVNKLGDPERRAASSAAYLLTSLLSAHPNMKMV 368
Query: 224 VLAEIEKMLFRTNISPRAQYYGVCFLNQFYLGK--DDSKVAESLIRIYFSFFK 274
V+ E++ LFR ++ RA+Y V FL+Q +L D K+A+ L+ +Y + FK
Sbjct: 369 VIDEVDSFLFRPHVGLRAKYQAVNFLSQIFLTSKGDGPKIAKRLVDVYIALFK 421
Score = 114 bits (274), Expect = 4e-25
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Query: 281 EIDSRLMSAILTGVKRAYPF---ADKERLTETQDHIDSIHRLVHLAGINISVHALALLFQ 337
E+DSR++SA+LTGV RA P+ ++ + + E Q I + RLVH N+ V AL LL+Q
Sbjct: 470 EMDSRILSALLTGVNRALPYVASSEVDDIVEVQTPI--LFRLVHSVNFNVGVQALMLLYQ 527
Query: 338 ISDASTGTSDRYYSALYKKLTNSDILNTTHTALLFSLVYKSLKQDKNIPRVVAFVKRLLQ 397
IS + SDR+Y ALY KL + + ++ L L+ K++K D + RV AF KRLLQ
Sbjct: 528 ISTKNQIASDRFYRALYAKLLSPASVTSSKPELFLGLLVKAMKNDVMLKRVAAFAKRLLQ 587
Query: 398 LCCYVLPAQACGMIFLLSRVLKDSSKKEAIKLVWNKREVKEEIKS-EDVI 446
+ P ACG +F+LS VLK +K +V V + I+ ED++
Sbjct: 588 VALQRPPQYACGCLFILSEVLK--AKPPLWAIVLQNESVDDGIEHFEDIV 635
Score = 68.5 bits (160), Expect = 3e-11
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 557 SAYNPLGRSPQHAGAELSAYTELLLLSRHFHPTVQLFAKKMLSDQLIQYSGDPLKDFSGI 616
++YNP R P + A+ +++ EL L+ H HP+V A+ +LS I YSGDPL D S
Sbjct: 697 ASYNPRHREPSYCNADHASWWELTALALHVHPSVSTMARTLLSGNNIVYSGDPLTDLSLP 756
Query: 617 RFLDRFVFKNPK 628
FLD+F+ K PK
Sbjct: 757 AFLDKFMEKKPK 768
>12_02_1261 + 27410921-27413401
Length = 826
Score = 32.3 bits (70), Expect = 2.2
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 1/102 (0%)
Query: 988 IRKAATLLKLSIVKKDEDDVF-VKPSPMTDGMSPARMLQFEIDGANNATPTMRRAVVXXX 1046
++KA+ K S EDD + V P P+ + +SP +L F + +R
Sbjct: 258 VQKASDSPKPSPPAAAEDDEYKVLPKPLQENVSPQEVLLFVRRTGLDVFHRIRSMKAVHA 317
Query: 1047 XXXXXXXXEYFEDTRQDVKIASECKNEETFKETAVITKANTV 1088
ED IA EC E F AV T + V
Sbjct: 318 FLSLYTSSLLVEDADYKSFIAHECSTENAFTNAAVETSDSFV 359
>07_01_0521 +
3867922-3867967,3868282-3868544,3868680-3868744,
3868828-3868990,3869798-3869946,3870041-3870289,
3870860-3871028,3871110-3871202,3871703-3871952,
3872127-3872217,3872673-3872769
Length = 544
Score = 31.5 bits (68), Expect = 3.8
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 336 FQISDASTGTSDRYYSALYKKLTNSD-ILNTTHTALLFSLVYKSLKQDKNIPRVVAFVKR 394
+Q+ + TS+RY+ KKL N+D I + + F++ L D V FV+
Sbjct: 21 YQVGSSKVDTSERYFDEWQKKLPNTDEIRKSKPRSRYFTISGVELSPDNMAVATVYFVQG 80
Query: 395 LLQL 398
+L L
Sbjct: 81 VLGL 84
>06_03_0152 +
17287133-17287490,17288541-17288734,17289349-17289557,
17289640-17289742,17290128-17290291,17290554-17290692,
17290908-17291078,17291162-17291298,17291445-17291759,
17291906-17291965,17292372-17292511,17292691-17292788,
17292875-17293387
Length = 866
Score = 31.5 bits (68), Expect = 3.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 555 VASAYNPLGRSPQHAGAELSAYTELLLLSRHFHPTVQLFAKKMLS 599
+ + Y+P + P +GA S EL LL +H+ +V A +LS
Sbjct: 694 LVAKYDPEAKDPYLSGALASVLWELSLLQKHYDSSVSSMASNILS 738
>03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 31.1 bits (67), Expect = 5.1
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 853 YNKKILG---NNKSGGKFKHKMADRKKTAAKNFGGKIKMQENKFAGKGKRKGGTANGPEN 909
YN + L NN S KM DR + F G+IK EN F KR E
Sbjct: 1409 YNSRTLTDHENNSSEQTNAKKMEDRLSKVVEVFTGRIKKMENDFVSLNKRSSMLDVQLEC 1468
Query: 910 LDLPDDTFRMGLDNFH 925
DL + L FH
Sbjct: 1469 QDLERISIVNRLGRFH 1484
>12_01_0056 +
482987-483019,483153-483362,483503-483604,484601-484700,
484775-484866,484962-485738
Length = 437
Score = 30.7 bits (66), Expect = 6.7
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 410 MIFLLSRVLKDSSKKEAIKLVWNKREVKEEIKSEDVIGPQQDTTEN---GTDKDGAEPTD 466
++ LL + D+ ++ ++L+ + ++EE + EDV + DT +N T DG+ D
Sbjct: 57 LLQLLPFLSGDTDSEQILELLLTYQILEEEDEEEDVNWDEDDTVDNFDRATYSDGSGDED 116
Query: 467 IVQDEEVKE 475
+Q+ K+
Sbjct: 117 FLQEMSEKD 125
>05_05_0088 + 22303074-22303253,22303401-22303478
Length = 85
Score = 30.7 bits (66), Expect = 6.7
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 287 MSAILTGVKRAYPFADKERLTETQDHIDSIHRLVHLAGINISVHALALLFQISDASTGTS 346
MS+ + PF +E+L E Q + S+H+ +L G ++ ++A+ ++ +S
Sbjct: 1 MSSSMASAAPEPPFRPREKLVEKQRYFQSVHKPTYLKGRYDAIASVAIPLALAASSVFLV 60
Query: 347 DRY 349
D +
Sbjct: 61 DSH 63
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 30.7 bits (66), Expect = 6.7
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 815 EDTAANKKQGSSQAVSNTDNSSLKQLAWEDKRNNWIKGYNKKILGNNKSGGKFKHKMADR 874
ED + K GS A+ N S + ++ +KG NK GN KS K K+ +
Sbjct: 723 EDISKTPKSGS--ALKNEGGRSSRSTG--KTKDGLLKGSNKDETGNTKSASKSKNDGGSK 778
Query: 875 KKTA---AKNFGGKIKMQENKFAGKGKRKGG 902
K + AK+ G K A G + G
Sbjct: 779 HKDSKDEAKSSGSNPKGASTPKAADGSKTNG 809
>02_02_0489 + 10869482-10871218
Length = 578
Score = 30.7 bits (66), Expect = 6.7
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 10/139 (7%)
Query: 792 GDEDGK-DDLSSLFASAEEFSTLLEDTAANKKQGSSQAVSNTDNSSLKQLAWEDKRNNWI 850
GD K DDL S+E + +D + K QA + + K+ A EDK +
Sbjct: 271 GDLPAKEDDLRMYQLSSEIWGKNAKDAGNSSKNKKGQAKKDKVSGDSKEAAKEDKVDEAA 330
Query: 851 KGYNKK--ILGNNKSGGKFKHKMA-DRKKTAAKNFGGKIKMQENKFAGKGK------RKG 901
N+K L NK G K K + K ++K + K G K K
Sbjct: 331 IAVNEKGGTLAENKKGKTNKQKTGMETKVGSSKEAALAASPTKGKKKGSHKDKLDEEAKS 390
Query: 902 GTANGPENLDLPDDTFRMG 920
GTA + DD +G
Sbjct: 391 GTAKVTSTIATDDDDGTLG 409
>03_04_0206 - 18493178-18495310
Length = 710
Score = 30.3 bits (65), Expect = 8.9
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 852 GYNKKILGNNKSGGKFKHKMADRKKTAAKNFGGKIKMQ----ENKFAGKGKRKG-GTANG 906
GY +K N+ F+ +M KKT +K K+K Q NK A K K KG AN
Sbjct: 391 GYEQKRKEMNRKFEVFEKQMKAAKKTGSKAAQDKVKGQALSKANKEAAKSKGKGKNVAND 450
Query: 907 PENL---DLP 913
+++ DLP
Sbjct: 451 DDDMKPADLP 460
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,571,464
Number of Sequences: 37544
Number of extensions: 1101076
Number of successful extensions: 2204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2191
Number of HSP's gapped (non-prelim): 15
length of query: 1096
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1006
effective length of database: 11,414,388
effective search space: 11482874328
effective search space used: 11482874328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 65 (30.3 bits)
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