GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000140-TA|BGIBMGA000140-PA|IPR005612|CBF
         (1096 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)               96   2e-19
SB_14048| Best HMM Match : CBF (HMM E-Value=9.6e-17)                   68   5e-11
SB_18674| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.95 
SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   1.3  
SB_12567| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   2.2  
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   2.9  
SB_10884| Best HMM Match : Antimicrobial11 (HMM E-Value=0.091)         31   3.8  
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   5.1  
SB_54731| Best HMM Match : LIM (HMM E-Value=2.4)                       30   8.9  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   8.9  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   8.9  
SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)               30   8.9  

>SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 95.9 bits (228), Expect = 2e-19
 Identities = 41/112 (36%), Positives = 74/112 (66%), Gaps = 1/112 (0%)

Query: 277 IKKGEIDSRLMSAILTGVKRAYPFADKERLTETQDHIDSIHRLVHLAGINISVHALALLF 336
           + KGE++++++SA+LTG+ RA+P+  KE      +  D+I R+VH++  N SV AL LL 
Sbjct: 185 VAKGEVETKMLSALLTGINRAFPYV-KENDEMYNEQFDTIFRVVHISSFNTSVQALMLLL 243

Query: 337 QISDASTGTSDRYYSALYKKLTNSDILNTTHTALLFSLVYKSLKQDKNIPRV 388
           Q+  +    SDR+Y ALY K+ + ++  ++  A+  ++++KS+K D ++ RV
Sbjct: 244 QVMSSRQSVSDRFYQALYTKMLDPNLCTSSKQAMFLNILFKSMKTDTSLARV 295



 Score = 38.7 bits (86), Expect = 0.025
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 131 RNILKLWYYEDQLKELYGTYVDALNKFAHDTVDANKEKSVSAMSYLLMHHPEREK 185
           R  L LW++ED LK  Y  +V +  +   D++   + K++ ++  LL   PE+E+
Sbjct: 128 RKRLILWHFEDLLKARYAEFVSSFERLLGDSLPEIRNKALGSIYDLLSERPEQEQ 182



 Score = 31.9 bits (69), Expect = 2.9
 Identities = 13/22 (59%), Positives = 17/22 (77%)

Query: 613 FSGIRFLDRFVFKNPKKRTENQ 634
           FS  RFLDRFV+KNPK + + +
Sbjct: 416 FSLSRFLDRFVYKNPKTKAKGK 437


>SB_14048| Best HMM Match : CBF (HMM E-Value=9.6e-17)
          Length = 573

 Score = 67.7 bits (158), Expect = 5e-11
 Identities = 28/78 (35%), Positives = 50/78 (64%)

Query: 311 DHIDSIHRLVHLAGINISVHALALLFQISDASTGTSDRYYSALYKKLTNSDILNTTHTAL 370
           +  D+I R+VH++  N SV AL LL Q+  +    SDR+Y ALY K+ + ++  ++  A+
Sbjct: 273 EQFDTIFRVVHISSFNTSVQALMLLLQVMSSRQSVSDRFYQALYTKMLDPNLCTSSKQAM 332

Query: 371 LFSLVYKSLKQDKNIPRV 388
             ++++KS+K D ++ RV
Sbjct: 333 FLNILFKSMKTDTSLARV 350



 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 131 RNILKLWYYEDQLKELYGTYVDALNKFAHDTVDANKEKSVSAMSYLLMHHPEREKILLTN 190
           R  L LW++ED LK  Y  +V +  +   D++   + K++ ++  LL   PE+E+ LL  
Sbjct: 183 RKRLILWHFEDLLKARYAEFVSSFERLLGDSLPEIRNKALGSIYDLLSERPEQEQFLLRL 242

Query: 191 IINKLGDPSQGVASKVIYHLCQIIYN 216
           ++NK+GDP + +ASK   HL + + N
Sbjct: 243 LVNKVGDPDRKIASKA-SHLIRCLGN 267



 Score = 34.3 bits (75), Expect = 0.55
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 613 FSGIRFLDRFVFKNPKKRTENQEED 637
           FS  RFLDRFV+KNPK + ++   D
Sbjct: 471 FSLSRFLDRFVYKNPKTKAKDDSND 495


>SB_18674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 33.5 bits (73), Expect = 0.95
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 908 ENLDLPDDTFRMGLDNFHLIG----ENVTVSERVTSVDTARSSVDTPSVLPDFNIPTPMN 963
           E+ D P   F  G + FH  G    E V+ +  + + +  +  + + +++P   IPT ++
Sbjct: 76  EDKDFPGTDFYTGKNEFHFYGWRGIEEVSSTTDIPATELNKGEISSTTIVPSVPIPTSLD 135

Query: 964 TPVNEIT 970
            P  +I+
Sbjct: 136 MPSPDIS 142


>SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)

Query: 431  WNKREVKEEIKSEDVIGPQQDTTENGTDKDGAEPTDIVQDEEVKET 476
            W K EV E I S D         +NG D++GAE   I  + + K T
Sbjct: 1027 WKKGEVNESIDSADTCKTAWSNDDNGDDQEGAERGQISSNLDSKLT 1072


>SB_12567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 797 KDDLSSLFASAEEFSTLLEDTAANKKQGSSQAVSNTDNSSLKQLAWEDKRNNW 849
           K++    F     FS L + T A  K+G+  A   T  + +K   WE + + W
Sbjct: 55  KEEFCRAFGDVSNFSCLDKQTCAIAKRGNKYATPRTAVALVKYEQWEQESSEW 107


>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 859 GNNKSGGKFKHKMADRKKTAAKNFGGKIKMQENKFAGKGKRKGGTANGPENLDLPDDTFR 918
           G   S G  +   A  +  AA    GK + Q+ K  GK      T + P++    D++ R
Sbjct: 700 GGGTSSGSIEKPSASAEGKAAPEESGKQESQQVKDKGKANSDSKTESAPKDDKNKDNSNR 759

Query: 919 MGLDNFHLIGENVTVSERVTSVDTARSSVDTPSVLPDFNIPT 960
             +     +G  +T +E      T  +S   PSV+P  ++ T
Sbjct: 760 PEITLIG-VGSPITETENKDGGKTVANS--EPSVVPSASVNT 798


>SB_10884| Best HMM Match : Antimicrobial11 (HMM E-Value=0.091)
          Length = 479

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 895 GKGKRKGGTANGPENLDLPDDTFRMGLDNFHLIGENVTVSERVTSVDTARSSVDTPSVLP 954
           G+   K  T N P+   L   T R G  N  L  EN+  S  + S DT +   +      
Sbjct: 88  GRPNLKLPTENIPDPTHLSTGT-REGRPNLKLPTENIPDSTHL-STDTRKGRPNLKLPTE 145

Query: 955 DFNIPTPMNTPVNEITPEILLPISETP 981
           D   PT ++T   +  P + LP  +TP
Sbjct: 146 DTPDPTHLSTDNRKGRPNLKLPTEDTP 172



 Score = 30.7 bits (66), Expect = 6.7
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 895 GKGKRKGGTANGPENLDLPDDTFRMGLDNFHLIGENVTVSERVTSVDTARSSVDTPSVLP 954
           G+   K  T N P++  L  DT R G  N  L  E+ T      S D  +   +      
Sbjct: 112 GRPNLKLPTENIPDSTHLSTDT-RKGRPNLKLPTED-TPDPTHLSTDNRKGRPNLKLPTE 169

Query: 955 DFNIPTPMNTPVNEITPEILLPISETP 981
           D   PT ++T   +  P + LP  +TP
Sbjct: 170 DTPYPTHLSTDNRKERPNLKLPTEDTP 196


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 108  LRTFEQHPLGHLDEMTSGNKQTKRNILKLWYYEDQLKELYGTYVDALNKFAHDTVDANKE 167
            L+  ++H LG L+ ++S   + +    +   Y++++ + +GT VDALN+  H      KE
Sbjct: 1936 LQEVKKH-LGKLEPVSSTLAELRTQAQQFKVYQNEINK-HGTTVDALNEMFHGLKKKQKE 1993

Query: 168  KSVSAMSYL 176
              +  ++ L
Sbjct: 1994 SKLKQLNKL 2002


>SB_54731| Best HMM Match : LIM (HMM E-Value=2.4)
          Length = 275

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 431 WNKREVKEEIKSEDVIGPQQDTTENGT 457
           WN R+V+ E+ + +++   +DT ENG+
Sbjct: 183 WNSRKVELEVNNTELVSVVEDTRENGS 209


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 19/154 (12%)

Query: 18   NYGQADKNADDKKGQ------GIAKNFAESLE---------YGEKKKWFHQLPEEPVTLP 62
            N G+ +KN ++ K +        A  F E L+          GE++K   Q  EE  T  
Sbjct: 1812 NLGEVEKNMEELKSEHSKELARAAAEFNEKLKDQKESHEKGAGEREKELLQQVEELSTQV 1871

Query: 63   KTLSTEQIEQLRKEATSALHGDTLAYETNAXXXXXXXXXXXPDVKLRTFEQHPLGHLDEM 122
            KTL  ++IEQL      ALH D  A                 + KL + E+     LDE 
Sbjct: 1872 KTLE-QRIEQLVIVKMDALH-DQKATLIEEHNTAIEKLNKEHEAKLESVERLYKAKLDEK 1929

Query: 123  TSGNKQTKRNILKLWY--YEDQLKELYGTYVDAL 154
               +    + +LK ++  Y ++ +EL  T  +A+
Sbjct: 1930 DFDHSSQVKQLLKEFHIKYGEKERELQDTVSNAI 1963


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 932 TVSERVTSVDTARSSVDTPSVLPDFNIPTPM-NTPVNEITPEILLPISETPKIPTET 987
           T + +  +  T+  +  TP+  P    PTP  +TP    TP    P   TPK PT T
Sbjct: 78  TPTPKTPTPTTSTLTKPTPATTPTPTKPTPTAHTPTTP-TPTAHTPTKPTPKTPTPT 133


>SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)
          Length = 997

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 14 EAYTNYGQADKNADDKKGQGIAKNFAESLEYGEKKKWFH-QLPE 56
          E  TN    D++     G G+ ++  + L YGE  KWFH +LP+
Sbjct: 19 EEQTNQEDDDEDEGFLDGVGVGESSKDELHYGE--KWFHGKLPD 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,626,723
Number of Sequences: 59808
Number of extensions: 1325605
Number of successful extensions: 2871
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2844
Number of HSP's gapped (non-prelim): 32
length of query: 1096
length of database: 16,821,457
effective HSP length: 90
effective length of query: 1006
effective length of database: 11,438,737
effective search space: 11507369422
effective search space used: 11507369422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 65 (30.3 bits)