GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000140-TA|BGIBMGA000140-PA|IPR005612|CBF
         (1096 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    26   1.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   3.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   7.8  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 927 IGENVTVSERVTSVDTARSSVDTPSVLPDFNIPTPMNTPVNEIT 970
           IGE +TVS   T      +S+ + +++    + T +  P N+I+
Sbjct: 421 IGEVITVSFTATLASIGAASIPSAALITMLIVLTALGLPTNDIS 464


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
            beta-synthase protein.
          Length = 504

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 963  NTPVNEITPEILLPISETPKIPTETIRKAATLLKLSIVKKDEDDVFVKPSPMTDGMSPAR 1022
            N    +I P+IL  I +TP I    I K+   +K  I  K E   F+ P          R
Sbjct: 29   NGDYTKIMPDILTAIGQTPLIKLNNIPKSYG-IKCEIYAKCE---FLNPGGSVKDRIAYR 84

Query: 1023 MLQ 1025
            M+Q
Sbjct: 85   MIQ 87


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 550 INMDKVASAYNPLGRSPQHAGAELS 574
           +N  +  ++ +P G SPQH+G+  S
Sbjct: 53  VNYAQQHNSPSPTGSSPQHSGSSAS 77


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 278,412
Number of Sequences: 429
Number of extensions: 11985
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 3
length of query: 1096
length of database: 140,377
effective HSP length: 65
effective length of query: 1031
effective length of database: 112,492
effective search space: 115979252
effective search space used: 115979252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)