Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000138-TA|BGIBMGA000138-PA|IPR002773|Deoxyhypusine
synthase
         (371 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.66 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   2.7  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 14/68 (20%), Positives = 29/68 (42%)

Query: 7   VEKPVKVAPNIAVNAVLQPSQDLPAETPIVAGYDWENGTDYNKILESYANSGFQATNFGK 66
           VE    +  ++ +  +++  + +    P+VA    EN T  N I ++     FQ   + K
Sbjct: 171 VESTSNLQADMPLERIIEAEKRVECNDPLVALVVNENNTTVNNICQATHKQLFQLVQWAK 230

Query: 67  TVVEINNM 74
            V    ++
Sbjct: 231 LVPHFTSL 238


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 35  IVAGYDWENGTDYNKILESYANSGFQATNFGKTVVEINNMLK 76
           I++G  +   T + +IL    NSG+  T FG  +   N+ ++
Sbjct: 237 IISGSIFMTTTSFYRIL----NSGYNLTTFGSFIFNANSAIE 274


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,916
Number of Sequences: 317
Number of extensions: 3515
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 371
length of database: 114,650
effective HSP length: 58
effective length of query: 313
effective length of database: 96,264
effective search space: 30130632
effective search space used: 30130632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)