Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000138-TA|BGIBMGA000138-PA|IPR002773|Deoxyhypusine
synthase
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...   389   e-109
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    27   3.2  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   3.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   4.3  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    27   4.3  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    26   7.4  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    26   7.4  
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    26   7.4  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   9.8  

>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score =  389 bits (958), Expect = e-109
 Identities = 188/322 (58%), Positives = 234/322 (72%), Gaps = 16/322 (4%)

Query: 44  GTDYNKILESYANSGFQATNFGKTVVEINNMLKSRAVPLTEENSDCYEEDQFIKKKTNCT 103
           G    +++ESY   GFQATN    V  IN M   R     EE SD              T
Sbjct: 42  GITVEELVESYGKIGFQATNLHDAVTIINEMRNWRDPNPPEEKSD------------RAT 89

Query: 104 IFLGYTSNMISSGLRDTIRFLVKNKLVDVIVTTAGGIEEDLIKCIAPTYVGDFNLSGKVL 163
           IFLGYTSN+ISSG+R+ +R+LV++K VDVIVTTAGG+EED+IKC+ PTYVGDF+L GK L
Sbjct: 90  IFLGYTSNLISSGVREVLRYLVQHKCVDVIVTTAGGVEEDIIKCLGPTYVGDFHLDGKNL 149

Query: 164 RTRGINRIGNLLVPNDNYCLFEEWVTPLLDEMISEQMKEGTVWSPSRITARLGERINNES 223
           R +G+NRIGNL+VPNDNYC FEEW+ P+L++M+ EQ   GT W+PS    RLG+ IN+ES
Sbjct: 150 RAKGLNRIGNLIVPNDNYCRFEEWIFPILNKMVEEQETLGTHWTPSSFIRRLGKEINDES 209

Query: 224 SVCYWAWRNNIPIFSPALTDGSLGDMMYFHSFK---RPXXXXXXXXXXXXXNTMAVKANN 280
           SV YWA++NNIPI+SPALTDGS+GDM+YFH++K   RP             NT AV+AN 
Sbjct: 210 SVLYWAYKNNIPIYSPALTDGSIGDMLYFHTYKATPRP-LVLDIVADIRNMNTHAVRANK 268

Query: 281 TGVXXXXXXXXKHHICNANLMRNGADYAVYVNTASEFDGSDAGARPDEAVSWGKIRPNAN 340
           +G+        KHHICNANLMRNGA+++VY+N+A+EFDGSDAGARPDEAVSWGKIR +A 
Sbjct: 269 SGIIILGGGVVKHHICNANLMRNGAEWSVYINSANEFDGSDAGARPDEAVSWGKIRGDAK 328

Query: 341 PVKLYADATLVFPLIVAQTFAK 362
            VK+Y + +L+FPLIVA TFAK
Sbjct: 329 KVKVYGEVSLLFPLIVAATFAK 350


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 32  ETPIVAGYDWENGTDYNKILESYANSGFQATNFGKTVVE 70
           ET  +A   +ENG  + KIL  Y+ S   +   G  +VE
Sbjct: 319 ETLPMALISYENGIAFEKILNEYSASSLNSVQDGGALVE 357


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 9   KPVKVAPNIAVNAVLQPSQDLPAETPIV 36
           +P+   PN+   A   PS  LP +TP++
Sbjct: 244 RPLSTKPNVVNGATHSPSPSLPFKTPLL 271


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 8/29 (27%), Positives = 19/29 (65%)

Query: 178 NDNYCLFEEWVTPLLDEMISEQMKEGTVW 206
           + N  + +EWV   LDE++++ +++  +W
Sbjct: 174 SSNGIVLDEWVFDRLDELLAQSLEDKELW 202


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 135 TTAGGIEEDLIKCIAPTYVGDFN 157
           T  G   ED+ KC+ P+Y G+F+
Sbjct: 23  TRIGFSGEDIPKCVLPSYCGEFS 45


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 143 DLIK-CIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPLLDE 194
           DL+K  +    VG+  L+ ++L+ + + R G L   + N    E W+   + E
Sbjct: 49  DLVKQSVEEAGVGNLELAREILKKKIVQRGGKLAEKSKNRTAKEGWIIQCISE 101


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 120 TIRFLVKNKLVDVIVTTAGGIEEDL 144
           T++FL KN +  +++T  GG+ E +
Sbjct: 62  TLKFLQKNNIPFILLTNGGGMHESV 86


>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 157 NLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPLLDEMISEQMKEGTVWSPSRITARLG 216
           +L  +++RT   N +G + + N +  +F+     L+D       K+ T+   S   ++L 
Sbjct: 157 DLQNQLVRTEAENLVGEMQLDNTSREVFKSSFQGLMDAFQLRAQKQMTL---SYYASQLA 213

Query: 217 ERINNE 222
           E IN+E
Sbjct: 214 ELINDE 219


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 187 WVTPLLDEMISEQMKEGTVWSPSRITARLGERINNESSVCYWAWRNNIPIF 237
           W T L++  + E++    V++P     RLG R ++ SS     +R+N   F
Sbjct: 471 WGTTLINRKLREEVLR-EVFAPKHARRRLGTRFHSRSSHRPSVFRDNSVAF 520


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,840
Number of Sequences: 5004
Number of extensions: 70582
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 9
length of query: 371
length of database: 2,362,478
effective HSP length: 74
effective length of query: 297
effective length of database: 1,992,182
effective search space: 591678054
effective search space used: 591678054
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)