Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000138-TA|BGIBMGA000138-PA|IPR002773|Deoxyhypusine
synthase
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24522| Best HMM Match : DS (HMM E-Value=0)                         412   e-115
SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)                      32   0.86 
SB_40771| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.5  
SB_5283| Best HMM Match : Ank (HMM E-Value=3.1e-09)                    29   6.1  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          29   6.1  

>SB_24522| Best HMM Match : DS (HMM E-Value=0)
          Length = 340

 Score =  412 bits (1015), Expect = e-115
 Identities = 188/332 (56%), Positives = 244/332 (73%), Gaps = 3/332 (0%)

Query: 15  PNIAVNAVLQPSQDLPAETPIVAGYDWENGTDYNKILESYANSGFQATNFGKTVVEINNM 74
           P IAV++VL  S+ +P  +  V GYD+  GTDY+ +L+SY N+GFQA +FGK V EIN M
Sbjct: 9   PQIAVDSVLLKSEPMPDGSETVKGYDFNQGTDYHALLQSYKNTGFQAMHFGKAVDEINKM 68

Query: 75  LKSRAVPLTEENSDCYEEDQFI--KKKTNCTIFLGYTSNMISSGLRDTIRFLVKNKLVDV 132
           +  +  P    N++  E D     + K NCTIFL YTSNMIS G+R+ IR+LV+N +VDV
Sbjct: 69  IAKKKEPYVP-NTENPELDILPTGRPKNNCTIFLAYTSNMISCGVREVIRYLVQNNMVDV 127

Query: 133 IVTTAGGIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPLL 192
           +VTT GGIEED +KC+AP+Y+GDF++SG+ LR +GINRIGNLLVPNDNYC  E+++ P+L
Sbjct: 128 LVTTGGGIEEDFMKCLAPSYLGDFSISGEFLRKKGINRIGNLLVPNDNYCKLEDFIQPVL 187

Query: 193 DEMISEQMKEGTVWSPSRITARLGERINNESSVCYWAWRNNIPIFSPALTDGSLGDMMYF 252
           D+M+ EQ  EG  W+PS+  ARLG+ IN+  SV YWA++NNIP+FSPA+TDG++GD +YF
Sbjct: 188 DKMLEEQQNEGINWTPSKFIARLGKEINHPESVYYWAYKNNIPVFSPAITDGAIGDAIYF 247

Query: 253 HSFKRPXXXXXXXXXXXXXNTMAVKANNTGVXXXXXXXXKHHICNANLMRNGADYAVYVN 312
           HS++ P             N  AV + NTG+        KHH+CNAN+MRNGADYAVYVN
Sbjct: 248 HSYRNPGLKLDIAEDVRLVNNHAVFSKNTGIIILGGGLVKHHVCNANMMRNGADYAVYVN 307

Query: 313 TASEFDGSDAGARPDEAVSWGKIRPNANPVKL 344
           TA EFDGSD+GARPDEAVSWGKI+  A PVK+
Sbjct: 308 TAQEFDGSDSGARPDEAVSWGKIKATATPVKV 339


>SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)
          Length = 374

 Score = 31.9 bits (69), Expect = 0.86
 Identities = 23/98 (23%), Positives = 41/98 (41%)

Query: 2   EIPCNVEKPVKVAPNIAVNAVLQPSQDLPAETPIVAGYDWENGTDYNKILESYANSGFQA 61
           E PC  EKP        +++ +    +L  +  +   +  +N TD N+  ++      + 
Sbjct: 61  EEPCTAEKPKGEIQEDKIDSSVTLPCELQKDEEVNEIHSVDNKTDENREDKAVIKHSAEC 120

Query: 62  TNFGKTVVEINNMLKSRAVPLTEENSDCYEEDQFIKKK 99
               ++  E    L S+A+  TEE +   EE    KKK
Sbjct: 121 VESTESSTESRTELTSKAILSTEEETSGAEEHPDSKKK 158


>SB_40771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 112 MISSGLRDTIRFLVKNKLVDVIVTTAGGIEEDLIKCI 148
           + S  L DT++ LVK++ +D ++      + DL K I
Sbjct: 98  LFSDSLSDTVKELVKDQFIDDVILKCSTFDTDLTKAI 134


>SB_5283| Best HMM Match : Ank (HMM E-Value=3.1e-09)
          Length = 481

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 78  RAVPLTEENSDCYEEDQFIKKKTNCTIFLGYTSNMISSGLRDTI 121
           +  P  +++ +C E  + +    NCT  LG  SN+   GL++ +
Sbjct: 9   KCTPFCDKSKECPEHHELLVSIVNCTDMLGSLSNL--DGLKECV 50


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 7    VEKPVKVAPNIAVNAVLQPSQD-LPAETPIVAGYD-WENGTDYNKILESYANSGFQATNF 64
            +E   K    +  +A+LQ ++  L     +   YD W+   D N ++++       A+N+
Sbjct: 1577 LENTFKAMRTVYDDAILQHTKSILEVRRKLQLSYDLWKKTKDINTVIQALNTVVKGASNY 1636

Query: 65   GKTVVEINNMLKSRAVPLTEENSD 88
             + + ++ + + S  V L  E  +
Sbjct: 1637 AENIQDVTSKINSPIVDLLTETGE 1660


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,010,873
Number of Sequences: 59808
Number of extensions: 476570
Number of successful extensions: 896
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 893
Number of HSP's gapped (non-prelim): 5
length of query: 371
length of database: 16,821,457
effective HSP length: 83
effective length of query: 288
effective length of database: 11,857,393
effective search space: 3414929184
effective search space used: 3414929184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)