Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000138-TA|BGIBMGA000138-PA|IPR002773|Deoxyhypusine
synthase
(371 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1076 + 30180923-30181150,30181746-30181913,30182063-301822... 194 7e-50
09_04_0150 - 15150169-15150228,15150294-15150529,15151844-151520... 185 4e-47
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 30 2.6
03_02_0277 + 7056341-7056391,7056681-7056764,7057107-7057223,705... 30 3.4
03_01_0195 - 1548204-1548257,1548547-1548642,1548726-1548770,154... 29 6.0
02_02_0712 + 13200174-13200761,13201966-13202616 29 7.9
>03_05_1076 +
30180923-30181150,30181746-30181913,30182063-30182281,
30182827-30182872,30183708-30183943,30184065-30184079,
30185749-30186061,30186189-30186403,30186598-30186600
Length = 480
Score = 194 bits (474), Expect = 7e-50
Identities = 97/184 (52%), Positives = 128/184 (69%), Gaps = 3/184 (1%)
Query: 22 VLQPSQDLP-AETPIVAGYDWEN-GTDYNKILESYANSGFQATNFGKTVVEINNMLKSR- 78
VL+PS+ L +AG D+ + G +L S A +GFQA+N G V +N ML R
Sbjct: 22 VLKPSESLDEGRFTRIAGADFNDAGLGLPGLLASLATTGFQASNLGDAVDVVNQMLDWRL 81
Query: 79 AVPLTEENSDCYEEDQFIKKKTNCTIFLGYTSNMISSGLRDTIRFLVKNKLVDVIVTTAG 138
+ E+ D E D ++ C IFLG+TSN++SSG+RD +RFLV++ +VDVIVTTAG
Sbjct: 82 SHEKPREDCDEAELDPTYRESVKCKIFLGFTSNLVSSGIRDVVRFLVQHHMVDVIVTTAG 141
Query: 139 GIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPLLDEMISE 198
GIEEDLIKC+APTY G+F+L G +LR++G+NRIGNLLVPNDNYC FE W+ PL D+M+ E
Sbjct: 142 GIEEDLIKCLAPTYRGEFSLPGTLLRSKGLNRIGNLLVPNDNYCKFENWIMPLFDQMLQE 201
Query: 199 QMKE 202
Q E
Sbjct: 202 QSTE 205
Score = 104 bits (250), Expect = 1e-22
Identities = 45/64 (70%), Positives = 52/64 (81%)
Query: 281 TGVXXXXXXXXKHHICNANLMRNGADYAVYVNTASEFDGSDAGARPDEAVSWGKIRPNAN 340
TG+ KHHICNAN+ RNGADYAVY+NTA EFDGSD+GA+PDEAVSWGKI+ +A
Sbjct: 237 TGIIVLGGGLPKHHICNANMFRNGADYAVYINTAQEFDGSDSGAQPDEAVSWGKIKGSAK 296
Query: 341 PVKL 344
PVKL
Sbjct: 297 PVKL 300
>09_04_0150 -
15150169-15150228,15150294-15150529,15151844-15152063,
15152218-15152385,15152969-15153214
Length = 309
Score = 185 bits (451), Expect = 4e-47
Identities = 92/173 (53%), Positives = 123/173 (71%), Gaps = 3/173 (1%)
Query: 22 VLQPSQDLP-AETPIVAGYDWEN-GTDYNKILESYANSGFQATNFGKTVVEINNMLKSR- 78
VL+PS+ L +AG D+ + G + +L S A +GFQA+N G V +N ML+ R
Sbjct: 28 VLKPSESLDEGRFTRIAGADFNDAGLGLSGMLASLATTGFQASNLGDAVDVVNQMLEWRL 87
Query: 79 AVPLTEENSDCYEEDQFIKKKTNCTIFLGYTSNMISSGLRDTIRFLVKNKLVDVIVTTAG 138
+ E+ D E D ++ C IFLG+TSN++SSG+RD +RFLV++ +VDVIVTTAG
Sbjct: 88 SHEKPREDCDEPELDPTYRESVKCKIFLGFTSNLVSSGIRDVVRFLVQHHMVDVIVTTAG 147
Query: 139 GIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPL 191
GIEEDLIKC+APTY GDF+L G +LR++G+NRIGNLLVPNDNYC FE W+ P+
Sbjct: 148 GIEEDLIKCLAPTYRGDFSLPGTLLRSKGLNRIGNLLVPNDNYCKFENWIMPI 200
Score = 101 bits (242), Expect = 9e-22
Identities = 43/63 (68%), Positives = 51/63 (80%)
Query: 281 TGVXXXXXXXXKHHICNANLMRNGADYAVYVNTASEFDGSDAGARPDEAVSWGKIRPNAN 340
TG+ KHHICNAN+ RNGAD+AVY+NTA EFDGSD+GA+PDEAVSWGKI+ +A
Sbjct: 228 TGIIVLGGGLPKHHICNANMFRNGADFAVYINTAQEFDGSDSGAQPDEAVSWGKIKGSAK 287
Query: 341 PVK 343
PVK
Sbjct: 288 PVK 290
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 30.3 bits (65), Expect = 2.6
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 151 TYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPLLDEMISEQMKEGTVWSPS 209
TYV + L LR + L++ N NYC+ +E + L+DE + + G PS
Sbjct: 251 TYVTNSELGFDYLRDNLAMTVDELVLRNFNYCVIDEVDSILIDEARTPLIISGLAEKPS 309
>03_02_0277 +
7056341-7056391,7056681-7056764,7057107-7057223,
7057335-7057772,7057889-7058295,7058371-7058470,
7058707-7058793,7059056-7059544
Length = 590
Score = 29.9 bits (64), Expect = 3.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 124 LVKNKLVDVIVTTAGGIEEDLIKCIAPTY--VGDFN 157
++ ++ D + T I ED+IKCIA Y + DFN
Sbjct: 245 ILGTRIADHVPQTPNKISEDMIKCIASIYIRIRDFN 280
>03_01_0195 -
1548204-1548257,1548547-1548642,1548726-1548770,
1549063-1549251,1549512-1549607,1550163-1550216,
1550566-1550582,1550701-1550797,1551604-1551681,
1551908-1551976,1552084-1552167,1552282-1552353,
1552757-1552831,1552915-1552990,1553080-1553141,
1553231-1553315,1553411-1553475,1554431-1554474,
1554733-1554988
Length = 537
Score = 29.1 bits (62), Expect = 6.0
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 124 LVKNKLVDVIVTTAGGIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLL 175
L+K+ +V ++ TAGGI + C+ + + L+G ++ G+N I ++
Sbjct: 172 LIKDLVVIIVSATAGGI---IFSCLGQPVIVGYLLAGSLVGPGGLNFISEMV 220
>02_02_0712 + 13200174-13200761,13201966-13202616
Length = 412
Score = 28.7 bits (61), Expect = 7.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 307 YAVYVNTASEFDGSDAGAR--------PDEAVSWGKIRPNANPVKLYADATL 350
Y+VYV+T F+GSD G P + V WG+I +L A A L
Sbjct: 167 YSVYVHTDPAFNGSDPGEASVFYRRTIPSKEVKWGEISMVEAERRLLAHALL 218
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,343,611
Number of Sequences: 37544
Number of extensions: 415262
Number of successful extensions: 758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 8
length of query: 371
length of database: 14,793,348
effective HSP length: 83
effective length of query: 288
effective length of database: 11,677,196
effective search space: 3363032448
effective search space used: 3363032448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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