GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000138-TA|BGIBMGA000138-PA|IPR002773|Deoxyhypusine
synthase
         (371 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-6|CAA19451.1|  371|Caenorhabditis elegans Hypothetical ...   390   e-109
U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical p...    37   0.026
U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical p...    37   0.026
AF003390-2|AAP31432.1|  341|Caenorhabditis elegans Hypothetical ...    31   1.00 
AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical ...    31   1.00 
AF099917-8|AAC68779.2|  457|Caenorhabditis elegans Hypothetical ...    31   1.7  
Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical pr...    30   3.0  
Z30317-4|CAA82969.1|  930|Caenorhabditis elegans Hypothetical pr...    29   7.0  
Z83110-6|CAB05528.3|  545|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z81462-7|CAB03846.3|  545|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z49128-7|CAA88956.2|  300|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AL033514-11|CAE47472.1|  436|Caenorhabditis elegans Hypothetical...    28   9.3  
AL033514-10|CAA22098.1|  605|Caenorhabditis elegans Hypothetical...    28   9.3  

>AL023828-6|CAA19451.1|  371|Caenorhabditis elegans Hypothetical
           protein Y17G7B.4 protein.
          Length = 371

 Score =  390 bits (960), Expect = e-109
 Identities = 184/352 (52%), Positives = 251/352 (71%), Gaps = 5/352 (1%)

Query: 17  IAVNAVLQPSQDLPAETPIVAGYDWE--NGTDYN--KILESYANSGFQATNFGKTVVEIN 72
           +A  AVL  S  +P  +  + G+D+   +G D++   IL SY ++GFQAT+  + + ++N
Sbjct: 15  LAQGAVLVKSCQVPDGSIPIRGFDFSTASGPDFSLSAILSSYMSTGFQATHLAQAIQQVN 74

Query: 73  NMLKSRAVPLTEENSDCYEEDQFIKKKTNCTIFLGYTSNMISSGLRDTIRFLVKNKLVDV 132
            ML  R  PLT ++ +        ++K +CTIFLGYTSN+++SGLR+ +R+ V+  LVD 
Sbjct: 75  QMLSLRDTPLTCDDDEKLFPYPEGRQKRSCTIFLGYTSNLVTSGLREVLRYCVQRNLVDC 134

Query: 133 IVTTAGGIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPLL 192
           IVT+AGGIEEDLIKC+ P+Y+G F + G  LR+ G+NR GN+L+PNDNYC FE+W+ P+L
Sbjct: 135 IVTSAGGIEEDLIKCLKPSYLGTFTMDGAKLRSNGMNRAGNVLIPNDNYCAFEDWLMPIL 194

Query: 193 DEMISEQMKEGTVWSPSRITARLGERINNESSVCYWAWRNNIPIFSPALTDGSLGDMMYF 252
           DE + EQ ++   W+PS++  RLGERI +ESS+ YWA ++ IP+F PALTDGSLGDM+YF
Sbjct: 195 DECLVEQEEKHLNWTPSKLIQRLGERIGDESSILYWAAKHRIPVFCPALTDGSLGDMLYF 254

Query: 253 HSFK-RPXXXXXXXXXXXXXNTMAVKANNTGVXXXXXXXXKHHICNANLMRNGADYAVYV 311
           HS K  P             NT+AVK+  TG         KHHI NANLMRNGAD+ VY+
Sbjct: 255 HSVKSSPGLRVDIVEDVRHINTIAVKSFKTGSIILGGGVVKHHINNANLMRNGADHTVYI 314

Query: 312 NTASEFDGSDAGARPDEAVSWGKIRPNANPVKLYADATLVFPLIVAQTFAKH 363
           NT  EFDGSD+GA+PDEAVSWGK++P+A  VK++A+ATLVFPL+VA+TFAKH
Sbjct: 315 NTGQEFDGSDSGAQPDEAVSWGKVKPSAGAVKVHAEATLVFPLLVAETFAKH 366


>U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical
           protein F36D4.5b protein.
          Length = 315

 Score = 36.7 bits (81), Expect = 0.026
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 168 INRIGNLL--VPNDNYCLFEEWVTPLLDEMISEQMKEGTVWSPSRITARLGERINNES 223
           INR+ NL   +P    C+ +EW+TP++ +   ++ K G+V S    T +L  R  N+S
Sbjct: 134 INRLANLSGSIPFLEKCIPQEWLTPIVLQASVDEKKRGSVDSAEEATEKLVVRSLNDS 191


>U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical
           protein F36D4.5a protein.
          Length = 334

 Score = 36.7 bits (81), Expect = 0.026
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 168 INRIGNLL--VPNDNYCLFEEWVTPLLDEMISEQMKEGTVWSPSRITARLGERINNES 223
           INR+ NL   +P    C+ +EW+TP++ +   ++ K G+V S    T +L  R  N+S
Sbjct: 153 INRLANLSGSIPFLEKCIPQEWLTPIVLQASVDEKKRGSVDSAEEATEKLVVRSLNDS 210


>AF003390-2|AAP31432.1|  341|Caenorhabditis elegans Hypothetical
           protein R155.1b protein.
          Length = 341

 Score = 31.5 bits (68), Expect = 1.00
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 41  WENGTDYNKILESY--ANSGFQATNFGKTVVEINNMLKSRAVPLT 83
           WE G DYN ++ES+    + F   +  + +  +NN L S  + L+
Sbjct: 169 WETGHDYNSVVESFNCGTNTFAKNHIHRRLRWVNNKLASHVITLS 213


>AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical
           protein R155.1a protein.
          Length = 473

 Score = 31.5 bits (68), Expect = 1.00
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 41  WENGTDYNKILESY--ANSGFQATNFGKTVVEINNMLKSRAVPLT 83
           WE G DYN ++ES+    + F   +  + +  +NN L S  + L+
Sbjct: 301 WETGHDYNSVVESFNCGTNTFAKNHIHRRLRWVNNKLASHVITLS 345


>AF099917-8|AAC68779.2|  457|Caenorhabditis elegans Hypothetical
           protein F54D10.8 protein.
          Length = 457

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 43  NGTDYNKILESYANSGFQATNFGKTVVEINNMLKSRAVPLTEENSDCYEEDQFIKKKTN 101
           +GT+YN +LE   +   Q  + G+  V + N+LK    P    + +  +ED   +K TN
Sbjct: 275 SGTEYNNLLEVIES---QPRSVGELHVSVLNILKYEDTPEKFTSMEQLKEDMMFRKWTN 330


>Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical
           protein F47H4.6 protein.
          Length = 488

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 13/111 (11%)

Query: 43  NGTDYNKILESYANSGFQATN--FGKTVVEINNMLKSRAVPLT-----EENSDCYEEDQF 95
           + T +NK    Y   G  +       +VV  N  LK R + LT      ++ DCYE  + 
Sbjct: 264 DSTSHNKDQGMYIKDGSHSKMALHDWSVVMQNQKLKLRELTLTLAMESYKHQDCYETIKT 323

Query: 96  IKKKTNCTI-----FLGYTSNMISSGLRDTIRFLVKNKLVDVIVTTAGGIE 141
           + +K+NC         G+T   +S  LR+  +  V N +V    T + GIE
Sbjct: 324 VLRKSNCLFVEKITLEGFTFREVSEVLRN-CKPRVLNMIVLNSSTESNGIE 373


>Z30317-4|CAA82969.1|  930|Caenorhabditis elegans Hypothetical
           protein T16G12.6 protein.
          Length = 930

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 3/100 (3%)

Query: 97  KKKTNCTIFLGYTSNMISSGLRDTI-RFLVKNKLVDVI-VTTAGGIEEDLIKCIAPTYVG 154
           K    C   +G    +IS     +I R+     L DVI V +   I  + ++    T++ 
Sbjct: 38  KTDYECMQTVGACMRIISQPTSSSIVRYFGAVALYDVIRVRSEECIANEAVQLSLKTFLI 97

Query: 155 DFNLSGKVLRTRGI-NRIGNLLVPNDNYCLFEEWVTPLLD 193
           D   SG   +T  + N++   L     YC+ + W TP+ D
Sbjct: 98  DSLKSGAYAQTTSVLNKLSAALALFSLYCVPDLWPTPVQD 137


>Z83110-6|CAB05528.3|  545|Caenorhabditis elegans Hypothetical
          protein F57C2.6 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 4  PCNVEKPVKVAPNIAVNAVLQPSQDLPAETPIVAGYDWENGTDYN---KILESYANSGFQ 60
          P   E+P K+ PN A +    P + +    P  +GYD ++ T      K+  S   S F 
Sbjct: 37 PIAAERPSKIFPNKARSGFKTPLRSINTTDPSTSGYDSKSITPQQNDPKLSMSAELSSFI 96

Query: 61 ATN 63
          A N
Sbjct: 97 ANN 99


>Z81462-7|CAB03846.3|  545|Caenorhabditis elegans Hypothetical
          protein F57C2.6 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 4  PCNVEKPVKVAPNIAVNAVLQPSQDLPAETPIVAGYDWENGTDYN---KILESYANSGFQ 60
          P   E+P K+ PN A +    P + +    P  +GYD ++ T      K+  S   S F 
Sbjct: 37 PIAAERPSKIFPNKARSGFKTPLRSINTTDPSTSGYDSKSITPQQNDPKLSMSAELSSFI 96

Query: 61 ATN 63
          A N
Sbjct: 97 ANN 99


>Z49128-7|CAA88956.2|  300|Caenorhabditis elegans Hypothetical
           protein M03C11.6 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 11/80 (13%)

Query: 78  RAVPLTEENSDCYEEDQFIKKKTNCTIFLGYTSNMI-------SSGLRDTI--RFLVKNK 128
           R V   ++  +C +  Q+IK+  NC + +  T N I       SS     +  RF VKN+
Sbjct: 31  RVVTDPKQMENCRKRRQYIKETLNCELSIPITENQIFSIDFIDSSRFERHVITRFEVKNR 90

Query: 129 L-VDVIVTTAG-GIEEDLIK 146
           L  D++   A  GI   LI+
Sbjct: 91  LETDILSIQASIGIPNTLIR 110


>AL033514-11|CAE47472.1|  436|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9b protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 158 LSGKVLRTRGINRIGNLLVPNDNYC-LFEEWVTPLLDEM 195
           +  K+   R  N  G +LV  D++C + EEW+ PLLD++
Sbjct: 236 IRAKIFGARRAN--GEVLVFLDSHCEVNEEWLPPLLDQI 272


>AL033514-10|CAA22098.1|  605|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9a protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 158 LSGKVLRTRGINRIGNLLVPNDNYC-LFEEWVTPLLDEM 195
           +  K+   R  N  G +LV  D++C + EEW+ PLLD++
Sbjct: 236 IRAKIFGARRAN--GEVLVFLDSHCEVNEEWLPPLLDQI 272


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,059,641
Number of Sequences: 27539
Number of extensions: 375566
Number of successful extensions: 731
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 14
length of query: 371
length of database: 12,573,161
effective HSP length: 82
effective length of query: 289
effective length of database: 10,314,963
effective search space: 2981024307
effective search space used: 2981024307
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)