GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000138-TA|BGIBMGA000138-PA|IPR002773|Deoxyhypusine
synthase
         (371 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    27   0.34 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   9.7  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 9   KPVKVAPNIAVNAVLQPSQDLPAETPIVAGYDWENGTDYNKILESYA 55
           K VK+  +IA+N+       +   TPIV  +D+ N   Y   +E YA
Sbjct: 166 KQVKIPHDIAINSTTGKRNVV---TPIVQSFDYNNTWVYIADVEGYA 209


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 144 LIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNY 181
           ++KC+ P++V DF    KVL        G   VP D+Y
Sbjct: 121 ILKCVVPSFVADF---VKVLSWH--TDQGEEFVPGDDY 153


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 45  TDYNKILESYANSGFQAT---NFGKTVVEINNMLKSRAVPLTEENSDCYEEDQFIKKKTN 101
           T+ N I     NS +  T   N   + ++I++ + +   P+  E  D YE  Q  KKK +
Sbjct: 219 TNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLT---PIKSEPIDAYEMHQISKKKLS 275

Query: 102 CTIFLGYTSNMISS 115
                G   +MI++
Sbjct: 276 PATPKGSKCSMITT 289


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 339  ANPVKLYADATLVFPLIVA 357
            A+ V  YAD  ++ PLIVA
Sbjct: 1602 ASTVPFYADVKVMLPLIVA 1620


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 339  ANPVKLYADATLVFPLIVA 357
            A+ V  YAD  ++ PLIVA
Sbjct: 1598 ASTVPFYADVKVMLPLIVA 1616


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 50  ILESYANSGFQATNFGKTVVEI 71
           IL+ Y N G    ++ +T +EI
Sbjct: 178 ILDQYTNPGNPLAHYDQTAIEI 199


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,937
Number of Sequences: 429
Number of extensions: 4600
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 371
length of database: 140,377
effective HSP length: 59
effective length of query: 312
effective length of database: 115,066
effective search space: 35900592
effective search space used: 35900592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)