Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000137-TA|BGIBMGA000137-PA|IPR001772|Kinase-associated,
C-terminal
         (313 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.72 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.72 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.8  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)

Query: 86   SRDPNEIMAEIRKVLDANNCDYEQR 110
            SRDP +I+A+++K+   NN +YE +
Sbjct: 1338 SRDPIKIVADLQKLKGINN-EYEDQ 1361


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)

Query: 86   SRDPNEIMAEIRKVLDANNCDYEQR 110
            SRDP +I+A+++K+   NN +YE +
Sbjct: 1338 SRDPIKIVADLQKLKGINN-EYEDQ 1361


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 12  DDRTYYG--VPLEGFTIAAESAAIHRT---LRP-KRCPLPQYSRLIIMLPLK 57
           DD T     V L   TI   ++ +H+T   +RP K+ P P   RL+  LP K
Sbjct: 628 DDETQVNRFVKLLVATIDEAASDVHQTHMRIRPPKKIPTPYGGRLVWTLPGK 679


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 12  DDRTYYG--VPLEGFTIAAESAAIHRT---LRP-KRCPLPQYSRLIIMLPLK 57
           DD T     V L   TI   ++ +H+T   +RP K+ P P   RL+  LP K
Sbjct: 628 DDETQVNRFVKLLVATIDEAASDVHQTHMRIRPPKKIPTPYGGRLVWTLPGK 679


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 12  DDRTYYG--VPLEGFTIAAESAAIHRT---LRP-KRCPLPQYSRLIIMLPLK 57
           DD T     V L   TI   ++ +H+T   +RP K+ P P   RL+  LP K
Sbjct: 628 DDETQVNRFVKLLVATIDEAASDVHQTHMRIRPPKKIPTPYGGRLVWTLPGK 679


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 12  DDRTYYG--VPLEGFTIAAESAAIHRT---LRP-KRCPLPQYSRLIIMLPLK 57
           DD T     V L   TI   ++ +H+T   +RP K+ P P   RL+  LP K
Sbjct: 628 DDETQVNRFVKLLVATIDEAASDVHQTHMRIRPPKKIPTPYGGRLVWTLPGK 679


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 61  CDRQGNEEQVKPRVLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHG 120
           C R  NE+Q      R  +SM  T S D +E+   +  V+       +  E+  +L   G
Sbjct: 788 CKRIYNEKQCCKNCARVDYSMNGTYSAD-DEVPMLLHGVVPRKEIPAKSAEQ--ILAEGG 844

Query: 121 DPN 123
            PN
Sbjct: 845 CPN 847


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,741
Number of Sequences: 317
Number of extensions: 1841
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 313
length of database: 114,650
effective HSP length: 57
effective length of query: 256
effective length of database: 96,581
effective search space: 24724736
effective search space used: 24724736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)