Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000137-TA|BGIBMGA000137-PA|IPR001772|Kinase-associated,
C-terminal
         (313 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                    141   6e-34
SB_25445| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   7e-08
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)               50   2e-06
SB_49622| Best HMM Match : E-MAP-115 (HMM E-Value=2.4)                 30   2.1  
SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)                 29   4.9  
SB_18574| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_55195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_25822| Best HMM Match : GspK (HMM E-Value=0.61)                     29   6.5  
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)                   29   6.5  
SB_39692| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_37731| Best HMM Match : TPD52 (HMM E-Value=1.2)                     28   8.6  
SB_47846| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_7268| Best HMM Match : DUF472 (HMM E-Value=0.99)                    28   8.6  

>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score =  141 bits (342), Expect = 6e-34
 Identities = 65/98 (66%), Positives = 78/98 (79%), Gaps = 2/98 (2%)

Query: 59  VCCDRQGN--EEQVKPRVLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLL 116
           V C   G+  +   KPR LRFTWSMKTTS+ DP +++ EI KVL+ANNCDYEQRE++LLL
Sbjct: 824 VACRGDGSMGDTNEKPRSLRFTWSMKTTSTMDPYDMIREIMKVLEANNCDYEQREKYLLL 883

Query: 117 CVHGDPNADSLVQWEIEVCKLPRLSLNGVRFKRISGQN 154
           C HG P  ++ VQWE+EVCKLPRLSLNGVRFKRISG +
Sbjct: 884 CCHGSPAENNHVQWEMEVCKLPRLSLNGVRFKRISGSS 921


>SB_25445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 55.2 bits (127), Expect = 7e-08
 Identities = 24/74 (32%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 79  WSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNADSLVQWEIEVCKLP 138
           +++ TTS+   +E+M E+++VL+ N+  ++Q+  ++L C   D     ++++E+EVC +P
Sbjct: 483 YNVSTTSTLSADEVMKELQRVLNDNDVLFKQKN-YVLRCKTIDNRGKVILEFEMEVCHIP 541

Query: 139 RLSLNGVRFKRISG 152
           ++ L G+R KR+ G
Sbjct: 542 KMELIGIRRKRMKG 555


>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
          Length = 1215

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 12/97 (12%)

Query: 69   QVKPRVLRFTWSMKTTSSRDPNEIMAEIRKVLDAN--NCDYEQRERFLLLCVHGDPNADS 126
            ++ P V R  +++  TS +D  +I+ EIR+ LD    N  YEQ E    +  HG      
Sbjct: 1027 ELSPSV-RLAFAVNMTSHKDIPDIITEIRRTLDQRSPNVVYEQSEHVFTV-QHGS----- 1079

Query: 127  LVQWEIEVCKLPR-LSLNGVRFKRISGQNKHRLQEHC 162
             V  EIEVC LP   SLNG+R +RISG N+ + ++ C
Sbjct: 1080 -VTMEIEVCHLPDPYSLNGLRLRRISG-NQWQYKKLC 1114


>SB_49622| Best HMM Match : E-MAP-115 (HMM E-Value=2.4)
          Length = 313

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 37  LRPKRCPLPQYSRLIIMLPLKPVCCDRQGNEEQVKPRVLRFTWSMKTTSSRDPNEIMAEI 96
           +R +R P  Q  RL+I L L+P    R+G++    P +LR   S +    R    I A+ 
Sbjct: 60  IRARRAPRAQEIRLVIPLQLRPGRKGRRGDKR--SPWILRIA-SPRNHRGRKHRRIGAKR 116

Query: 97  RKVLDAN 103
           RK+   N
Sbjct: 117 RKLKSGN 123


>SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 70  VKPRVLRFTWSMKTTSSRDPNE 91
           +KP+ +R+T  MKT  SRDP E
Sbjct: 539 IKPQRMRYTREMKTKGSRDPLE 560


>SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)
          Length = 649

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 130 WEIEVCKLPRLSLNGVRFKRISGQNKHRLQEHCVKDSERTQAVT 173
           WE E  K  ++  N ++ KR+S   K R QE   +  ER + +T
Sbjct: 378 WEQEKQKQEQIKKNQMQLKRLSEAEKKRQQEQNRRRKEREEEMT 421


>SB_18574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 87  RDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNADSLVQ 129
           RD N ++ ++   ++AN C+  +  R L    +GD  AD  ++
Sbjct: 18  RDENRLLRQLLTTMNANMCEMSESLRALKRGANGDHEADPAIK 60


>SB_55195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 75  LRFTWSMKTTSSRDP--NEIMAEIRKVLDANNCD 106
           LR  W +K  + R P  N++MA +++ LDA N D
Sbjct: 35  LRGNWMVKRPTWRSPLANKLMARLQRKLDAANLD 68


>SB_25822| Best HMM Match : GspK (HMM E-Value=0.61)
          Length = 309

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 75  LRFTWSMKTTSSRDP--NEIMAEIRKVLDANNCD 106
           LR  W +K  + R P  N++MA +++ LDA N D
Sbjct: 112 LRGNWMVKRPTWRSPLANKLMARLQRKLDAANLD 145


>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
          Length = 237

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 284 AHAAPTAPRPLAPHTPVTVRLSAPRADPPS 313
           ++ APT+     P++P  V+LS P   PPS
Sbjct: 147 SYPAPTSSPHAYPYSPAQVQLSTPPQTPPS 176


>SB_39692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 81  MKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGD 121
           M +   RDP   + E R  L A NC +++   +   CVHG+
Sbjct: 17  MYSPKRRDPEANITENRLRL-ARNCIFDEHSFYFAKCVHGN 56


>SB_37731| Best HMM Match : TPD52 (HMM E-Value=1.2)
          Length = 499

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 87  RDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNAD 125
           RD N ++ ++   ++AN C+  +  R L    +GD  AD
Sbjct: 18  RDENRLLRQLLTTMNANMCEMSESLRALKRGANGDHEAD 56


>SB_47846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 75  LRFTWSMKTTSSRDP--NEIMAEIRKVLDANNCD 106
           LR  W +K  + R P  N++MA +++ LDA N D
Sbjct: 19  LRGNWVVKRPTWRSPLANKLMARLQRKLDAANLD 52


>SB_7268| Best HMM Match : DUF472 (HMM E-Value=0.99)
          Length = 554

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 87  RDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNAD 125
           RD N ++ ++   ++AN C+  +  R L    +GD  AD
Sbjct: 18  RDENRLLRQLLTTMNANMCEMSESLRALKRGANGDHKAD 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,612,073
Number of Sequences: 59808
Number of extensions: 291984
Number of successful extensions: 682
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 14
length of query: 313
length of database: 16,821,457
effective HSP length: 82
effective length of query: 231
effective length of database: 11,917,201
effective search space: 2752873431
effective search space used: 2752873431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)