Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000137-TA|BGIBMGA000137-PA|IPR001772|Kinase-associated,
C-terminal
         (313 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              27   0.21 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.85 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   4.6  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 16/73 (21%), Positives = 32/73 (43%)

Query: 56  LKPVCCDRQGNEEQVKPRVLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLL 115
           L+P+C    G  +++   V     +++  + +   E M +   V+D N    E+  R ++
Sbjct: 29  LQPICVGETGTSQKIIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEKNTRDIV 88

Query: 116 LCVHGDPNADSLV 128
             V  D   D L+
Sbjct: 89  QAVLDDNETDQLI 101


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 65  GNEEQVKPRVLRFTWSMKTTSSRDPN-EIMAEIRKV 99
           G+E+ V PR+L  TW       + P+ +++A I  V
Sbjct: 799 GSEDSVIPRILYLTWYSSNGDIKVPSTKVLAMISSV 834


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 288 PTAPRPLAPHTPVTVRLSAPRADPPS 313
           P  PRP++ HT     + AP    PS
Sbjct: 652 PLLPRPISCHTTPDSFIEAPNKTLPS 677


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 107 YEQRERFLLLCVHGDPNADSLVQWEIEVCKLPRLSLNGVRFKRISGQNKHRLQEHCVKDS 166
           +  R  FL  C     N  + V+  + + KLP+L+ N  + + I+G  K  LQ    +  
Sbjct: 260 HNDRLGFLTFC---PTNLGTTVRASVHI-KLPKLAANRAKLEEIAG--KFNLQVRGTR-G 312

Query: 167 ERTQA 171
           E T+A
Sbjct: 313 EHTEA 317


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,430
Number of Sequences: 429
Number of extensions: 2424
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 313
length of database: 140,377
effective HSP length: 58
effective length of query: 255
effective length of database: 115,495
effective search space: 29451225
effective search space used: 29451225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)