GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000137-TA|BGIBMGA000137-PA|IPR001772|Kinase-associated,
C-terminal
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    32   0.092
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    29   0.85 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 32.3 bits (70), Expect = 0.092
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 119 HGDPNADSLVQWEIEVCKLPRLSLNGVRFKRISGQN 154
           +G+  A +L  +EI + K+P LSL GV F RISG +
Sbjct: 841 NGESPASNLA-FEIYIVKVPILSLRGVSFHRISGNS 875



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/42 (23%), Positives = 25/42 (59%)

Query: 68  EQVKPRVLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQ 109
           + +KP  L+  +S+ TTS++    I  ++ +V+   + +Y++
Sbjct: 748 DPIKPVFLKGLFSVSTTSTKSTESIQRDLIRVMGMLDIEYKE 789


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 13/131 (9%)

Query: 53  MLPLKPVCCDRQGNEEQVKPRVLRFTWSMKTTSSRDPNEIMAEIRKVLDANN-------C 105
           +L    V  D   NE+Q    +++F +     + RD   + AE R++LD          C
Sbjct: 308 LLDSDEVVSDDDSNEQQTM--MMKFNYLQHLRNKRD-EAVHAEKRRLLDIRGSIHDRLVC 364

Query: 106 DYEQRERFLLLCV---HGDPNADSLVQWEIEVCKLPRLSLNGVRFKRISGQNKHRLQEHC 162
            YE R   L       H D      ++ E+   +  ++  +  + K+   +    LQE  
Sbjct: 365 RYENRYNKLHASEYNHHHDWAVRQAIREEVAAVEAAKIRADEEKKKKEREEQVRLLQESA 424

Query: 163 VKDSERTQAVT 173
            KD+E  +A T
Sbjct: 425 DKDAEMNEAST 435


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 288 PTAPRPLAPHTPVTVRLSAPRADPP 312
           P AP  + P  PV+  LS+P ++PP
Sbjct: 963 PAAPPSIPPPLPVSNILSSPTSEPP 987


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,065,800
Number of Sequences: 5004
Number of extensions: 35269
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 11
length of query: 313
length of database: 2,362,478
effective HSP length: 73
effective length of query: 240
effective length of database: 1,997,186
effective search space: 479324640
effective search space used: 479324640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)