GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000137-TA|BGIBMGA000137-PA|IPR001772|Kinase-associated,
C-terminal
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0140 - 18358997-18359082,18359255-18359318,18359469-183595...    32   0.68 
09_06_0081 + 20745627-20748144,20748211-20748308                       29   3.6  
07_03_0944 + 22787933-22789906                                         28   8.4  

>05_04_0140 -
           18358997-18359082,18359255-18359318,18359469-18359583,
           18360101-18360216,18360420-18360541,18360628-18360757,
           18361328-18361420
          Length = 241

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 61  CDRQ----GNEEQVKPRVLRFTWSM-KTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLL 115
           C+R+     NEEQ    ++R +W++  + +  D N  +  +   L  +N   + RE+  L
Sbjct: 33  CEREVAEAANEEQKSDSIMRLSWALVHSKNQEDVNRGIGMLEASLGQSNSPLQTREKLYL 92

Query: 116 LCVHGDPNAD 125
           L V    N D
Sbjct: 93  LAVGHYRNGD 102


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 286 AAPTAPRPLAPHTPV-TVRLSAPRADPP 312
           +APT P PL P  PV T    AP AD P
Sbjct: 432 SAPTVPTPLVPAPPVPTPHAPAPPADVP 459


>07_03_0944 + 22787933-22789906
          Length = 657

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 287 APTAPRPLAPHTPVTVRLSAPRADPPS 313
           +P +PR + P +P++ R+ AP    PS
Sbjct: 526 SPRSPRTMEPTSPLSARVGAPATQRPS 552


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,586,497
Number of Sequences: 37544
Number of extensions: 265926
Number of successful extensions: 761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 5
length of query: 313
length of database: 14,793,348
effective HSP length: 82
effective length of query: 231
effective length of database: 11,714,740
effective search space: 2706104940
effective search space used: 2706104940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)