Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000135-TA|BGIBMGA000135-PA|undefined
         (189 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   1.6  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   2.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.3  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   8.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   8.3  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 7   REDFMRKSFRAPRVSPAPDSQESALNGAPPPSP 39
           RE+    + R   VS  PDS  S  +  P P P
Sbjct: 201 RENGKSSAKRKQLVSEHPDSPNSKKSATPSPPP 233



 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 23  APDSQESALNGAPPPSPVSLAMLERTAQP 51
           +P+S++SA    PP   V+      T QP
Sbjct: 220 SPNSKKSATPSPPPQLEVNERKENLTCQP 248


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 102 KLERQIGEMERGLERAQNG 120
           K+E   G    GLER QNG
Sbjct: 200 KIEDLNGAFRAGLERVQNG 218


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 26  SQESALNGAPPPSPVSLA 43
           S  S  NGA  P PVS+A
Sbjct: 92  SPYSYANGAAGPIPVSMA 109


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 139 TGVSSVGGGGYLPADSDTEHDGA 161
           TG ++  GG    ADS +  DGA
Sbjct: 45  TGSTNGDGGARSNADSTSHTDGA 67


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 139 TGVSSVGGGGYLPADSDTEHDGA 161
           TG ++  GG    ADS +  DGA
Sbjct: 201 TGSTNGDGGARSNADSTSHTDGA 223


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 21  SPAPDSQESALNGAPPPSPVSLA 43
           +P  DSQ++ALN +   S V+ A
Sbjct: 256 APGGDSQQAALNYSTLASAVASA 278


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,844
Number of Sequences: 317
Number of extensions: 1356
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 189
length of database: 114,650
effective HSP length: 53
effective length of query: 136
effective length of database: 97,849
effective search space: 13307464
effective search space used: 13307464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)