Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000135-TA|BGIBMGA000135-PA|undefined
         (189 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.45 
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)                    29   3.2  
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_30841| Best HMM Match : HLH (HMM E-Value=1.5)                       28   5.6  
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   5.6  
SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)                    28   5.6  
SB_48834| Best HMM Match : PH (HMM E-Value=3.3e-05)                    27   7.3  
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               27   7.3  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               27   7.3  
SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)                     27   7.3  
SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_1116| Best HMM Match : THAP (HMM E-Value=0.00013)                   27   9.7  
SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4)                    27   9.7  

>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 22   PAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQYEVTSTGIAPKRLEISRAHP 75
            P+ D Q+S+    PPPSP+S     +    Q +  E +ST  +P+   I    P
Sbjct: 1034 PSIDKQDSSRGSEPPPSPLSSQPSPKRWSSQNSLGENSSTSSSPRMSIIIAQEP 1087


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/33 (39%), Positives = 24/33 (72%)

Query: 102  KLERQIGEMERGLERAQNGNVTVDERVRYAEHE 134
            +L++QI +++R L  A++   T DE+V+ AE+E
Sbjct: 1747 ELQKQIADLQRKLNEAESKIRTADEKVQDAENE 1779


>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
          Length = 872

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 18  PRVSPAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQYEV 58
           P   P P    + L  +PPPSPVS    +    P R+QY +
Sbjct: 791 PPTPPPPPRVMNGLPPSPPPSPVSSTGTQ--LDPSRSQYSL 829


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/19 (52%), Positives = 17/19 (89%)

Query: 122 VTVDERVRYAEHENLLRTG 140
           ++V +R++YAE+ENLL +G
Sbjct: 704 ISVSQRMKYAENENLLYSG 722


>SB_30841| Best HMM Match : HLH (HMM E-Value=1.5)
          Length = 189

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 101 RKLERQIGEMERGLERAQNGNVTVDERVRYAEHE 134
           RKLE Q+  M+  L+ A+N     DER + A  E
Sbjct: 68  RKLEGQVNTMQEELDDAENEAKAADERSKKAAAE 101


>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 1997

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 101  RKLERQIGEMERGLERAQNGNVTVDERVRYAEHE 134
            RKLE Q+  M+  L+ A+N     DER + A  E
Sbjct: 1764 RKLEGQVNTMQEELDDAENEAKAADERSKKAAAE 1797


>SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)
          Length = 1239

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 12  RKSFRAPRVSPAPDS--QESALNGAPPPSPVSLAMLERT 48
           R S R P   P+P++  +E  L+     SP SL ML+RT
Sbjct: 590 RSSSRGPSRDPSPETLRRERRLSEGKGYSPTSLPMLKRT 628


>SB_48834| Best HMM Match : PH (HMM E-Value=3.3e-05)
          Length = 329

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 32  NGAPPPSPVSLAMLERTAQPQRTQYEVTSTGIAPKR 67
           +G+PPPSP SL++ E TA  +RT  +  ++ I  K+
Sbjct: 125 SGSPPPSPKSLSVEEPTA-GRRTFVKRKTSKIGTKK 159


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 18  PRVSPAPDSQESALNGAPP-PSPVSLAMLERTA----QPQRTQYEVTSTGIAPKR 67
           P+ +P P+S+ +A    PP   P  L ++ER A    +   +     S  IAPK+
Sbjct: 837 PKQAPKPESKAAASTEVPPEEEPRQLTLIERLALKRTESTSSASSSVSEAIAPKK 891


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 17  APRVSPAPDSQESALNGAPPPSPVSLAMLERTAQP 51
           +P  SP+  S    L   PPP P+S+ +L +   P
Sbjct: 586 SPSYSPSSPSFHHNLRPTPPPLPLSIPLLLQATPP 620


>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
          Length = 1146

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 12   RKSFRAPRVSPAPDSQESALNGAPP--PSPVSLAMLERTAQPQRTQYEVTSTGIAPKR 67
            R+ FRAP  S     Q     GAP   P P   A + R A PQ     V+S G  P R
Sbjct: 951  REVFRAPDGSTVY-YQTRQPAGAPQQTPQPPQPAQIMRPAHPQMISQPVSSLGRLPTR 1007


>SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 100 LRKLERQIGEMERGLERAQNGNVTVDERVRYAEHENLLRTGVSS 143
           LR+L R+IG   R ++ A+   V+   +VR  E    L+  + S
Sbjct: 131 LRQLSREIGVSRRFIKNAKTKKVSYTRKVRLVEIRKRLQEDIIS 174


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 18   PRVSPAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQYEVTS 60
            PR +P P ++ S     P   P S    E T +P RT  E T+
Sbjct: 1105 PRTTPEPTTEPSRTKPEPTTEP-SRTKPEPTTEPPRTTSEPTT 1146


>SB_1116| Best HMM Match : THAP (HMM E-Value=0.00013)
          Length = 331

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 151 PADSDTEHDGAPFSRNETTRSSK 173
           P D+ T HD  P +RN+ T +SK
Sbjct: 111 PKDARTTHDTKPKTRNQKTATSK 133


>SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4)
          Length = 368

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 2   ERKLTREDFMRKSFRAPRVSPAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQYEVTST 61
           E  L  +D +R S R P+ +      E +L+ + PP    +A+L R +    T ++V  T
Sbjct: 213 EVALPIKDRLRAS-RKPQENENSQEVEKSLDSSTPPGHAYIALLHRLSLATLTDFKVFLT 271

Query: 62  GI 63
            +
Sbjct: 272 AL 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,819,880
Number of Sequences: 59808
Number of extensions: 226356
Number of successful extensions: 620
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 18
length of query: 189
length of database: 16,821,457
effective HSP length: 78
effective length of query: 111
effective length of database: 12,156,433
effective search space: 1349364063
effective search space used: 1349364063
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)