Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000135-TA|BGIBMGA000135-PA|undefined
(189 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g01670.1 68417.m00217 expressed protein similar to A. thalian... 31 0.49
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 30 1.1
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 30 1.1
At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DN... 30 1.1
At5g05100.1 68418.m00541 expressed protein 29 1.5
At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing ... 29 2.6
At5g61850.1 68418.m07760 floral meristem identity control protei... 28 4.5
At3g43550.1 68416.m04626 GDSL-motif lipase, putative similar to ... 28 4.5
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 28 4.5
At1g59406.1 68414.m06678 GDSL-motif lipase, putative similar to ... 28 4.5
At1g59030.1 68414.m06668 GDSL-motif lipase, putative similar to ... 28 4.5
At1g05410.1 68414.m00549 expressed protein 28 4.5
At1g61240.2 68414.m06901 expressed protein contains Pfam profile... 27 6.0
At1g61240.1 68414.m06900 expressed protein contains Pfam profile... 27 6.0
At1g11400.2 68414.m01310 expressed protein 27 7.9
At1g11400.1 68414.m01309 expressed protein 27 7.9
>At4g01670.1 68417.m00217 expressed protein similar to A. thaliana
hypothetical protein F14M4.23, GenBank accession number
AC004411
Length = 249
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 145 GGGGYLPADSDTEHDGAPFSRNETTRSSKNQ 175
GGGGYL S D A S NE +++ NQ
Sbjct: 90 GGGGYLAVSSPVSGDKAYASENEVQKTNNNQ 120
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 120 GNVTVDERVRYAEHENLLRTGVSSV----GGGGYLPADSDTEHDGAPFSRNETTRS 171
GNV RV + L +G SS GGGGY D++ G RN++ RS
Sbjct: 96 GNVNFARRVECNKCGALAPSGTSSGANDRGGGGYSRGGGDSDRGGGRGGRNDSGRS 151
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 120 GNVTVDERVRYAEHENLLRTGVSSV----GGGGYLPADSDTEHDGAPFSRNETTRS 171
GNV RV + L +G SS GGGGY D++ G RN++ RS
Sbjct: 96 GNVNFARRVECNKCGALAPSGTSSGANDRGGGGYSRGGGDSDRGGGRGGRNDSGRS 151
>At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DNA
topoisomerase IV subunit A (GI:26454107) [Mycoplasma
penetrans]
Length = 772
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 99 VLRKLERQIGEMERGLERAQNGNVTVDERVRYAEHENLL 137
+L ++ER+ E +GLE ++ + D+ + A+ +N+L
Sbjct: 227 MLEEIEREFEEATKGLEELRHSTSSTDDEAQSAKRQNML 265
>At5g05100.1 68418.m00541 expressed protein
Length = 324
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 2 ERKLTREDFMRKSFRAPRVSPAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQYEV 58
ERK + + F +P S DS++S+ PPP P L TA P R + EV
Sbjct: 150 ERKEEYDKARARIFNSPSSS---DSEDSSTRAPPPPYP-RLDSKHNTACPSRNETEV 202
>At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing
protein similar to SP|Q9Y4I5 Tesmin
(Metallothionein-like 5, testis-specific) {Homo
sapiens}; contains Pfam profile PF03638:
Tesmin/TSO1-like CXC domain
Length = 408
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/48 (31%), Positives = 18/48 (37%)
Query: 9 DFMRKSFRAPRVSPAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQY 56
D +KS P SP SQ+S PP P Q R +Y
Sbjct: 24 DSFQKSLEPPPCSPVKSSQQSETEVTPPQKPPLHQFGHNQVQKNRVRY 71
>At5g61850.1 68418.m07760 floral meristem identity control protein
LEAFY (LFY) identical to PIR|B38104 LFY floral meristem
identity control protein, splice form 2 - Arabidopsis
thaliana; contains Pfam profile PF01698: Floricaula /
Leafy protein
Length = 420
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 102 KLERQIGEMERGLERAQNGNVTVDERVRYAEHENLLRTGVSSVGGGGYLPADSDTEHDGA 161
K+++Q + +R ++ +V DE V E ++ G+ + GG L + EH
Sbjct: 185 KMKKQ--QQQRRRKKPMLTSVETDEDVNEGEDDD----GMDNGNGGSGLGTERQREHPFI 238
Query: 162 PFSRNETTRSSKNQLKVIFLRYK 184
E R KN L +F Y+
Sbjct: 239 VTEPGEVARGKKNGLDYLFHLYE 261
>At3g43550.1 68416.m04626 GDSL-motif lipase, putative similar to
family II lipase EXL3 (GI:15054386), EXL1 (GI:15054382),
EXL2 (GI:15054384) [Arabidopsis thaliana]; contains Pfam
profile PF00657: Lipase/Acylhydrolase with GDSL-like
motif
Length = 349
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 11 MRKSFRAPRVSPAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQYEVTSTGIAPKRL 68
M K F A R+SPA DS + L+G V + + P++ +EV G K L
Sbjct: 243 MAKQFNA-RLSPALDSLDKELDGVIIYINVYDTLFDMIQHPKKYGFEVADRGCCGKGL 299
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 17 APRVSPAPDSQESALNGAPPPSPVSL--AMLERTAQPQRTQYEVTSTGIAPKRLEISRAH 74
AP SP P ++ + PPP PV A+ ++P S G K++++ H
Sbjct: 251 APTPSPPPPIKKGSSPSPPPPPPVKKVGALSSSASKPPPAPVRGASGGETSKQVKLKPLH 310
>At1g59406.1 68414.m06678 GDSL-motif lipase, putative similar to
family II lipase EXL3 GI:15054386 from [Arabidopsis
thaliana]; contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 349
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 11 MRKSFRAPRVSPAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQYEVTSTGIAPKRL 68
M K F A R+SPA DS + L+G V + + P++ +EV G K L
Sbjct: 243 MAKQFNA-RLSPALDSLDKELDGVILYINVYDTLFDMIQHPKKYGFEVADRGCCGKGL 299
>At1g59030.1 68414.m06668 GDSL-motif lipase, putative similar to
family II lipase EXL3 GI:15054386 from [Arabidopsis
thaliana]; contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 349
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 11 MRKSFRAPRVSPAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQYEVTSTGIAPKRL 68
M K F A R+SPA DS + L+G V + + P++ +EV G K L
Sbjct: 243 MAKQFNA-RLSPALDSLDKELDGVILYINVYDTLFDMIQHPKKYGFEVADRGCCGKGL 299
>At1g05410.1 68414.m00549 expressed protein
Length = 471
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 100 LRKLERQIGEMERGLERAQNGNVTVDERVRYAEHENL 136
+ KLE +IGE+ R L +AQ + E +A+ E L
Sbjct: 363 MHKLEEEIGEVLRALRKAQEFEYQIAEGKLHAQKECL 399
>At1g61240.2 68414.m06901 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 425
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 126 ERVRYAEHENLLRTGVSSVGGGGYLPADSDTEHDGAPFSRNETTRSSKNQLK 177
++V + E + G+ ++GG GY P ++ G R T S+ +++
Sbjct: 315 KKVGIVDSEYIFHQGIQTLGGSGY-PDKKNSARSGVNRRRGSATFDSRTEIR 365
>At1g61240.1 68414.m06900 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 425
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 126 ERVRYAEHENLLRTGVSSVGGGGYLPADSDTEHDGAPFSRNETTRSSKNQLK 177
++V + E + G+ ++GG GY P ++ G R T S+ +++
Sbjct: 315 KKVGIVDSEYIFHQGIQTLGGSGY-PDKKNSARSGVNRRRGSATFDSRTEIR 365
>At1g11400.2 68414.m01310 expressed protein
Length = 204
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 99 VLRKLERQIGEMERGLERAQNGNVTVDERVRYAEHENLLRTGVSSVGGGGYLPADSDTEH 158
+L R G + + + R + G DE V+Y +L++ ++S G GY P D +
Sbjct: 25 ILEPTRRPDGTLRKPI-RIRPGYTPEDEVVKYQSKGSLMKKEMASQGPPGYEP-DPAPKP 82
Query: 159 DGAPFSRNETTRSSKNQ 175
RNE + + Q
Sbjct: 83 KTKAAKRNERKKEKRLQ 99
>At1g11400.1 68414.m01309 expressed protein
Length = 204
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 99 VLRKLERQIGEMERGLERAQNGNVTVDERVRYAEHENLLRTGVSSVGGGGYLPADSDTEH 158
+L R G + + + R + G DE V+Y +L++ ++S G GY P D +
Sbjct: 25 ILEPTRRPDGTLRKPI-RIRPGYTPEDEVVKYQSKGSLMKKEMASQGPPGYEP-DPAPKP 82
Query: 159 DGAPFSRNETTRSSKNQ 175
RNE + + Q
Sbjct: 83 KTKAAKRNERKKEKRLQ 99
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.130 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,022,839
Number of Sequences: 28952
Number of extensions: 153481
Number of successful extensions: 486
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 18
length of query: 189
length of database: 12,070,560
effective HSP length: 77
effective length of query: 112
effective length of database: 9,841,256
effective search space: 1102220672
effective search space used: 1102220672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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