GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000135-TA|BGIBMGA000135-PA|undefined
         (189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             31   0.081
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.33 
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    29   0.33 
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   3.0  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   7.0  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   9.3  

>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 31.5 bits (68), Expect = 0.081
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 4   KLTREDFMRKSF-RAPRV----SPAPDSQESALNGAPPPSPVSLAML---ERTAQPQRTQ 55
           KL      +KSF + PR+    S +P+SQ + L+  P P  +S  +    + T+   R  
Sbjct: 310 KLLNLSTPKKSFGQTPRIKTELSESPNSQRTLLSAVPTPLELSAELAYKEDLTSLASRAN 369

Query: 56  YEVTSTGIAPKRLEISRAHPI 76
               STG+ P   + + A P+
Sbjct: 370 ISDNSTGLTPTLAKATLAQPV 390


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 110 MERGLERAQNGNVTVDERVRYAEHENLLRTGVSSVGGGGYLPADSDTEH 158
           +E G+E AQ   V +DE      H+  +   V ++ G   L ++SD E+
Sbjct: 20  IELGMEPAQKVQVDLDEAFNQMLHDGKVEEVVEAINGSPDLLSESDVEN 68


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 100 LRKLERQIGEMERGLERAQNGNVTVDERVRYAEHEN 135
           L+ +E    ++E   E   + NV++++RV Y E EN
Sbjct: 87  LKNIEESYKKLEEKTEHLSDDNVSLEKRVEYLETEN 122


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 154 SDTEHDGAPFSRNETTRSSKNQLKVIFL 181
           ++ EHDG P SR + + +  N   ++FL
Sbjct: 54  TEAEHDGIPHSRKKVSSAHFNPSTLLFL 81


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 100 LRKLERQIGEMERGLERAQNGNVTVDERV 128
           +RKLE +I   + GLE  Q    T+ +R+
Sbjct: 611 MRKLEEKIESTKYGLETIQTSGKTIKQRI 639


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 105 RQIGEMERGLERAQNGNVTVDERVRYAEHENLLRTGVSSVGGGGYL 150
           R    M RGL   +N +VT +  V Y EH ++ +   S+    G L
Sbjct: 12  RNFSFMNRGLLGLRNLSVTHNNLVSYLEHLSVQKPSTSNTVAQGTL 57


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 23  APDSQESALNGAPPPSP 39
           AP S +SA  G PPP P
Sbjct: 294 APSSGDSANGGLPPPPP 310


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 24   PDSQESALNGAPPPSPVSLAMLERT 48
            P  Q + LN   PPS +SLA ++ +
Sbjct: 1504 PQIQYALLNWCQPPSSISLASIDES 1528


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,006
Number of Sequences: 5004
Number of extensions: 27420
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 8
length of query: 189
length of database: 2,362,478
effective HSP length: 69
effective length of query: 120
effective length of database: 2,017,202
effective search space: 242064240
effective search space used: 242064240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)