Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000135-TA|BGIBMGA000135-PA|undefined
(189 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013) 29 3.2
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_30841| Best HMM Match : HLH (HMM E-Value=1.5) 28 5.6
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 28 5.6
SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29) 28 5.6
SB_48834| Best HMM Match : PH (HMM E-Value=3.3e-05) 27 7.3
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0) 27 7.3
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 7.3
SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092) 27 7.3
SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_1116| Best HMM Match : THAP (HMM E-Value=0.00013) 27 9.7
SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4) 27 9.7
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 31.5 bits (68), Expect = 0.45
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 22 PAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQYEVTSTGIAPKRLEISRAHP 75
P+ D Q+S+ PPPSP+S + Q + E +ST +P+ I P
Sbjct: 1034 PSIDKQDSSRGSEPPPSPLSSQPSPKRWSSQNSLGENSSTSSSPRMSIIIAQEP 1087
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 102 KLERQIGEMERGLERAQNGNVTVDERVRYAEHE 134
+L++QI +++R L A++ T DE+V+ AE+E
Sbjct: 1747 ELQKQIADLQRKLNEAESKIRTADEKVQDAENE 1779
>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
Length = 872
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 18 PRVSPAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQYEV 58
P P P + L +PPPSPVS + P R+QY +
Sbjct: 791 PPTPPPPPRVMNGLPPSPPPSPVSSTGTQ--LDPSRSQYSL 829
>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 122 VTVDERVRYAEHENLLRTG 140
++V +R++YAE+ENLL +G
Sbjct: 704 ISVSQRMKYAENENLLYSG 722
>SB_30841| Best HMM Match : HLH (HMM E-Value=1.5)
Length = 189
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 101 RKLERQIGEMERGLERAQNGNVTVDERVRYAEHE 134
RKLE Q+ M+ L+ A+N DER + A E
Sbjct: 68 RKLEGQVNTMQEELDDAENEAKAADERSKKAAAE 101
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 101 RKLERQIGEMERGLERAQNGNVTVDERVRYAEHE 134
RKLE Q+ M+ L+ A+N DER + A E
Sbjct: 1764 RKLEGQVNTMQEELDDAENEAKAADERSKKAAAE 1797
>SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)
Length = 1239
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 12 RKSFRAPRVSPAPDS--QESALNGAPPPSPVSLAMLERT 48
R S R P P+P++ +E L+ SP SL ML+RT
Sbjct: 590 RSSSRGPSRDPSPETLRRERRLSEGKGYSPTSLPMLKRT 628
>SB_48834| Best HMM Match : PH (HMM E-Value=3.3e-05)
Length = 329
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 32 NGAPPPSPVSLAMLERTAQPQRTQYEVTSTGIAPKR 67
+G+PPPSP SL++ E TA +RT + ++ I K+
Sbjct: 125 SGSPPPSPKSLSVEEPTA-GRRTFVKRKTSKIGTKK 159
>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
Length = 1182
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 18 PRVSPAPDSQESALNGAPP-PSPVSLAMLERTA----QPQRTQYEVTSTGIAPKR 67
P+ +P P+S+ +A PP P L ++ER A + + S IAPK+
Sbjct: 837 PKQAPKPESKAAASTEVPPEEEPRQLTLIERLALKRTESTSSASSSVSEAIAPKK 891
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 17 APRVSPAPDSQESALNGAPPPSPVSLAMLERTAQP 51
+P SP+ S L PPP P+S+ +L + P
Sbjct: 586 SPSYSPSSPSFHHNLRPTPPPLPLSIPLLLQATPP 620
>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
Length = 1146
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 12 RKSFRAPRVSPAPDSQESALNGAPP--PSPVSLAMLERTAQPQRTQYEVTSTGIAPKR 67
R+ FRAP S Q GAP P P A + R A PQ V+S G P R
Sbjct: 951 REVFRAPDGSTVY-YQTRQPAGAPQQTPQPPQPAQIMRPAHPQMISQPVSSLGRLPTR 1007
>SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 100 LRKLERQIGEMERGLERAQNGNVTVDERVRYAEHENLLRTGVSS 143
LR+L R+IG R ++ A+ V+ +VR E L+ + S
Sbjct: 131 LRQLSREIGVSRRFIKNAKTKKVSYTRKVRLVEIRKRLQEDIIS 174
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 18 PRVSPAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQYEVTS 60
PR +P P ++ S P P S E T +P RT E T+
Sbjct: 1105 PRTTPEPTTEPSRTKPEPTTEP-SRTKPEPTTEPPRTTSEPTT 1146
>SB_1116| Best HMM Match : THAP (HMM E-Value=0.00013)
Length = 331
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 151 PADSDTEHDGAPFSRNETTRSSK 173
P D+ T HD P +RN+ T +SK
Sbjct: 111 PKDARTTHDTKPKTRNQKTATSK 133
>SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4)
Length = 368
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 ERKLTREDFMRKSFRAPRVSPAPDSQESALNGAPPPSPVSLAMLERTAQPQRTQYEVTST 61
E L +D +R S R P+ + E +L+ + PP +A+L R + T ++V T
Sbjct: 213 EVALPIKDRLRAS-RKPQENENSQEVEKSLDSSTPPGHAYIALLHRLSLATLTDFKVFLT 271
Query: 62 GI 63
+
Sbjct: 272 AL 273
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.130 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,819,880
Number of Sequences: 59808
Number of extensions: 226356
Number of successful extensions: 620
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 18
length of query: 189
length of database: 16,821,457
effective HSP length: 78
effective length of query: 111
effective length of database: 12,156,433
effective search space: 1349364063
effective search space used: 1349364063
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -