Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000134-TA|BGIBMGA000134-PA|undefined
         (165 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X89894-1|CAA61984.1|  443|Homo sapiens nuclear receptor protein.       35   0.16 
U12767-1|AAB02581.1|  587|Homo sapiens mitogen induced nuclear o...    35   0.16 
S81243-1|AAB36006.1|  684|Homo sapiens CHN protein.                    35   0.16 
D78579-1|BAA11419.1|  626|Homo sapiens neuron derived orphan rec...    35   0.16 
AL359710-3|CAI95139.1|  443|Homo sapiens nuclear receptor subfam...    35   0.16 
AL359710-2|CAI95138.1|  626|Homo sapiens nuclear receptor subfam...    35   0.16 
AL359710-1|CAM16648.1|  637|Homo sapiens nuclear receptor subfam...    35   0.16 
AL358937-4|CAI95320.1|  626|Homo sapiens nuclear receptor subfam...    35   0.16 
AL358937-3|CAM22558.1|  637|Homo sapiens nuclear receptor subfam...    35   0.16 
BC004940-1|AAH04940.1|  325|Homo sapiens Similar to RIKEN cDNA 2...    31   1.9  
AF358137-1|AAK57486.1|  451|Homo sapiens naked cuticle-2 protein.      31   1.9  
AB062887-1|BAB70501.1|  451|Homo sapiens Dvl-binding protein NKD...    31   1.9  
D87446-1|BAA13387.1| 1805|Homo sapiens KIAA0257 protein.               31   2.6  
M29474-1|AAA60248.1| 1043|Homo sapiens RAG1 protein.                   30   3.4  
BC037344-1|AAH37344.1|  931|Homo sapiens RAG1 protein protein.         30   3.4  
AB029033-1|BAA83062.1|  740|Homo sapiens KIAA1110 protein protein.     30   3.4  
U15306-1|AAA69517.1| 1104|Homo sapiens NFX1 protein.                   30   4.5  
BC012151-1|AAH12151.1| 1120|Homo sapiens nuclear transcription f...    30   4.5  
AL356472-6|CAH72746.1| 1120|Homo sapiens nuclear transcription f...    30   4.5  
AL356218-4|CAI13305.1| 1120|Homo sapiens nuclear transcription f...    30   4.5  

>X89894-1|CAA61984.1|  443|Homo sapiens nuclear receptor protein.
          Length = 443

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 27  PGMGHSVSVQRHHAHSQSYKHKQELPPPVSKP-DAIKSHVMRLLKRSKSHTPATRALENQ 85
           P   H      HH H    +H+Q   PP S P D +        K+S   TP T A   Q
Sbjct: 92  PSYHHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQ 151


>U12767-1|AAB02581.1|  587|Homo sapiens mitogen induced nuclear
           orphan receptor protein.
          Length = 587

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 27  PGMGHSVSVQRHHAHSQSYKHKQELPPPVSKP-DAIKSHVMRLLKRSKSHTPATRALENQ 85
           P   H      HH H    +H+Q   PP S P D +        K+S   TP T A   Q
Sbjct: 53  PSYHHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQ 112


>S81243-1|AAB36006.1|  684|Homo sapiens CHN protein.
          Length = 684

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 27  PGMGHSVSVQRHHAHSQSYKHKQELPPPVSKP-DAIKSHVMRLLKRSKSHTPATRALENQ 85
           P   H      HH H    +H+Q   PP S P D +        K+S   TP T A   Q
Sbjct: 150 PSYHHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQ 209


>D78579-1|BAA11419.1|  626|Homo sapiens neuron derived orphan
           receptor protein.
          Length = 626

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 27  PGMGHSVSVQRHHAHSQSYKHKQELPPPVSKP-DAIKSHVMRLLKRSKSHTPATRALENQ 85
           P   H      HH H    +H+Q   PP S P D +        K+S   TP T A   Q
Sbjct: 92  PSYHHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQ 151


>AL359710-3|CAI95139.1|  443|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 443

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 27  PGMGHSVSVQRHHAHSQSYKHKQELPPPVSKP-DAIKSHVMRLLKRSKSHTPATRALENQ 85
           P   H      HH H    +H+Q   PP S P D +        K+S   TP T A   Q
Sbjct: 92  PSYHHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQ 151


>AL359710-2|CAI95138.1|  626|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 626

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 27  PGMGHSVSVQRHHAHSQSYKHKQELPPPVSKP-DAIKSHVMRLLKRSKSHTPATRALENQ 85
           P   H      HH H    +H+Q   PP S P D +        K+S   TP T A   Q
Sbjct: 92  PSYHHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQ 151


>AL359710-1|CAM16648.1|  637|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 637

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 27  PGMGHSVSVQRHHAHSQSYKHKQELPPPVSKP-DAIKSHVMRLLKRSKSHTPATRALENQ 85
           P   H      HH H    +H+Q   PP S P D +        K+S   TP T A   Q
Sbjct: 103 PSYHHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQ 162


>AL358937-4|CAI95320.1|  626|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 626

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 27  PGMGHSVSVQRHHAHSQSYKHKQELPPPVSKP-DAIKSHVMRLLKRSKSHTPATRALENQ 85
           P   H      HH H    +H+Q   PP S P D +        K+S   TP T A   Q
Sbjct: 92  PSYHHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQ 151


>AL358937-3|CAM22558.1|  637|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 637

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 27  PGMGHSVSVQRHHAHSQSYKHKQELPPPVSKP-DAIKSHVMRLLKRSKSHTPATRALENQ 85
           P   H      HH H    +H+Q   PP S P D +        K+S   TP T A   Q
Sbjct: 103 PSYHHHHHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQ 162


>BC004940-1|AAH04940.1|  325|Homo sapiens Similar to RIKEN cDNA
           2210403L10 gene protein.
          Length = 325

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 77  PATRALENQPDPRNFERRTVFARPVTDEQXXXXXXXXXXXSADKRVMVTIVDGLPVVVTG 136
           PA RAL+ QP P+  E++     P    +            A    +  ++   P     
Sbjct: 186 PAARALDTQPRPKGPEKQ-FLKSPKGSGKPPGVPASSKSGKAFSYYLPAVLP--PQAPQD 242

Query: 137 QNQIPQPPPPVTHHRHAHRDKSR 159
            + +PQPPPP   H+  +R K R
Sbjct: 243 GHHLPQPPPPPYGHKR-YRQKGR 264


>AF358137-1|AAK57486.1|  451|Homo sapiens naked cuticle-2 protein.
          Length = 451

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 77  PATRALENQPDPRNFERRTVFARPVTDEQXXXXXXXXXXXSADKRVMVTIVDGLPVVVTG 136
           PA RAL+ QP P+  E++     P    +            A    +  ++   P     
Sbjct: 312 PAARALDTQPRPKGPEKQ-FLKSPKGSGKPPGVPASSKSGKAFSYYLPAVLP--PQAPQD 368

Query: 137 QNQIPQPPPPVTHHRHAHRDKSR 159
            + +PQPPPP   H+  +R K R
Sbjct: 369 GHHLPQPPPPPYGHKR-YRQKGR 390


>AB062887-1|BAB70501.1|  451|Homo sapiens Dvl-binding protein NKD2
           protein.
          Length = 451

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 77  PATRALENQPDPRNFERRTVFARPVTDEQXXXXXXXXXXXSADKRVMVTIVDGLPVVVTG 136
           PA RAL+ QP P+  E++     P    +            A    +  ++   P     
Sbjct: 312 PAARALDTQPRPKGPEKQ-FLKSPKGSGKPPGVPASSKSGKAFSYYLPAVLP--PQAPQD 368

Query: 137 QNQIPQPPPPVTHHRHAHRDKSR 159
            + +PQPPPP   H+  +R K R
Sbjct: 369 GHHLPQPPPPPYGHKR-YRQKGR 390


>D87446-1|BAA13387.1| 1805|Homo sapiens KIAA0257 protein.
          Length = 1805

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 28   GMGHSVSVQRHHAHSQSYKHKQ-ELPPPVSKP 58
            G   S    +HHAHS   +H Q  LPPPV +P
Sbjct: 1204 GAKQSQHGSQHHAHSPLEQHPQPPLPPPVPQP 1235


>M29474-1|AAA60248.1| 1043|Homo sapiens RAG1 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 11/43 (25%), Positives = 27/43 (62%)

Query: 33  VSVQRHHAHSQSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSH 75
           VS+++++ H  S+K  +E+   ++K    + H++ L +R++ H
Sbjct: 367 VSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKH 409


>BC037344-1|AAH37344.1|  931|Homo sapiens RAG1 protein protein.
          Length = 931

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 11/43 (25%), Positives = 27/43 (62%)

Query: 33  VSVQRHHAHSQSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSH 75
           VS+++++ H  S+K  +E+   ++K    + H++ L +R++ H
Sbjct: 367 VSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKH 409


>AB029033-1|BAA83062.1|  740|Homo sapiens KIAA1110 protein protein.
          Length = 740

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 129 GLPVVVTGQNQIPQPPPPVTH 149
           G PV VT Q  +P PPPP  H
Sbjct: 696 GSPVKVTHQPPLPPPPPPYNH 716


>U15306-1|AAA69517.1| 1104|Homo sapiens NFX1 protein.
          Length = 1104

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)

Query: 120  KRVMVTIVDGL----PVVVTG---QNQIPQPPPPVTHHRH 152
            + V+VT + G     P  +TG   +    +PPPP+ HHRH
Sbjct: 1038 RNVVVTAIRGKSVCPPTTLTGVLEREMQARPPPPIPHHRH 1077


>BC012151-1|AAH12151.1| 1120|Homo sapiens nuclear transcription
            factor, X-box binding 1 protein.
          Length = 1120

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)

Query: 120  KRVMVTIVDGL----PVVVTG---QNQIPQPPPPVTHHRH 152
            + V+VT + G     P  +TG   +    +PPPP+ HHRH
Sbjct: 1054 RNVVVTAIRGKSVCPPTTLTGVLEREMQARPPPPIPHHRH 1093


>AL356472-6|CAH72746.1| 1120|Homo sapiens nuclear transcription
            factor, X-box binding 1 protein.
          Length = 1120

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)

Query: 120  KRVMVTIVDGL----PVVVTG---QNQIPQPPPPVTHHRH 152
            + V+VT + G     P  +TG   +    +PPPP+ HHRH
Sbjct: 1054 RNVVVTAIRGKSVCPPTTLTGVLEREMQARPPPPIPHHRH 1093


>AL356218-4|CAI13305.1| 1120|Homo sapiens nuclear transcription
            factor, X-box binding 1 protein.
          Length = 1120

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)

Query: 120  KRVMVTIVDGL----PVVVTG---QNQIPQPPPPVTHHRH 152
            + V+VT + G     P  +TG   +    +PPPP+ HHRH
Sbjct: 1054 RNVVVTAIRGKSVCPPTTLTGVLEREMQARPPPPIPHHRH 1093


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.130    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,427,442
Number of Sequences: 224733
Number of extensions: 1017347
Number of successful extensions: 4239
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4197
Number of HSP's gapped (non-prelim): 44
length of query: 165
length of database: 73,234,838
effective HSP length: 84
effective length of query: 81
effective length of database: 54,357,266
effective search space: 4402938546
effective search space used: 4402938546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)