Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000134-TA|BGIBMGA000134-PA|undefined
         (165 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69360-5|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    30   0.72 
Z69360-4|CAA93286.2|  369|Caenorhabditis elegans Hypothetical pr...    30   0.72 
Z69360-3|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    30   0.72 
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    28   2.9  
U55363-9|AAA97967.1|  184|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    28   3.8  
Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical p...    27   6.7  
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical...    27   6.7  
U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo...    27   8.9  
AC025722-2|AAK68508.1|  605|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z69360-5|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 46  KHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRALENQPDP 88
           +++Q  PPP  +P   +       +R+    P+ R  ENQP P
Sbjct: 113 QYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLPSPRGYENQPQP 155


>Z69360-4|CAA93286.2|  369|Caenorhabditis elegans Hypothetical
           protein F25H8.5b protein.
          Length = 369

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 46  KHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRALENQPDP 88
           +++Q  PPP  +P   +       +R+    P+ R  ENQP P
Sbjct: 113 QYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLPSPRGYENQPQP 155


>Z69360-3|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 46  KHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRALENQPDP 88
           +++Q  PPP  +P   +       +R+    P+ R  ENQP P
Sbjct: 113 QYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLPSPRGYENQPQP 155


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 36  QRHHAHSQSYKHKQELPPPVSKPDAIKSHVMR-LLKRSKSHTPATRALENQPDPRNFERR 94
           QR H     ++ +   P P  + DAI+  V+R +L+ S S  P T +LE + +       
Sbjct: 155 QRIHRIRPGHRIRPSPPAPPPRVDAIEEAVLRAVLEVSTSIAPETSSLEAEAETTTVSET 214

Query: 95  T 95
           T
Sbjct: 215 T 215


>U55363-9|AAA97967.1|  184|Caenorhabditis elegans Hypothetical
          protein ZC404.1 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 36 QRHHAHSQSYK-HKQELPPPVSKPDAIKSHVMRLLKR 71
          ++  A  + Y+  K  LP P S+ + I+ HVMRL+K+
Sbjct: 16 EKRVASRRPYRPRKPYLPRPPSQLEIIQQHVMRLIKQ 52


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 28  GMGHSVSVQRHHAHSQSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRALENQPD 87
           G GH V+ + H  H  +Y  +Q   PP ++         +     +      R  E+ PD
Sbjct: 100 GSGHLVATESHQLHPPNYNLQQAQTPPPTRHSQYVDAAPQAYGSGQLVPENQRQPESAPD 159

Query: 88  PRNFERRTVFARPVTDEQ 105
            R ++   V   P + +Q
Sbjct: 160 -RPYQIMNVGCNPQSAQQ 176


>Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical
           protein Y41E3.11 protein.
          Length = 917

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 132 VVVTGQNQIPQPPPPV 147
           VVV G NQ   PPPPV
Sbjct: 713 VVVAGNNQFSFPPPPV 728


>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.31 protein.
          Length = 1219

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 57  KPDAIKSHVMRLLKRSK-SHTPATRALENQPDPRNFERRTVFARPVTDEQXXXXXXXXXX 115
           K D+ +   +  L  ++ +H P T      P  +   R T  +RP  ++Q          
Sbjct: 752 KRDSFQQDFIEFLDYNEINHQPITTVTFAPPTYQEPPRTT--SRPYQNQQNNRKRMRTST 809

Query: 116 XSADKRVMV--TIVDGLPVVVTGQNQIPQPPPPVTHHRHAHRD 156
            +   R  V  T V       T     P PPPPVT  + +  D
Sbjct: 810 TTKAPRTTVPPTTVTVRTTKTTTTTTTPPPPPPVTSKKSSFLD 852


>U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical
           protein C14F11.2 protein.
          Length = 638

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 143 PPPPVTHHRHAHRDKSRRLNY 163
           PP PV H +H HR  +  LN+
Sbjct: 315 PPEPVKHVQHDHRPVNGNLNH 335


>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform c protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 141 PQPPPPVTHHRHAHRDKSR 159
           P PPPP  H  H H   S+
Sbjct: 13  PPPPPPPYHFNHVHTPPSK 31


>AC025722-2|AAK68508.1|  605|Caenorhabditis elegans Hypothetical
           protein Y50D4C.3 protein.
          Length = 605

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 136 GQNQIPQPPPPVTHHRHAHRDKSRR 160
           G  Q P PPPP  HH    + ++++
Sbjct: 487 GSQQGPPPPPPSQHHPRGFQQQAQQ 511


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.130    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,285,599
Number of Sequences: 27539
Number of extensions: 163147
Number of successful extensions: 805
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 796
Number of HSP's gapped (non-prelim): 12
length of query: 165
length of database: 12,573,161
effective HSP length: 76
effective length of query: 89
effective length of database: 10,480,197
effective search space: 932737533
effective search space used: 932737533
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)