GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000134-TA|BGIBMGA000134-PA|undefined
         (165 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   1.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   2.3  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   2.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   4.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.9  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
          protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 2  YEVSCVAGN--KVDAAYAVKSLSNVILPGMGHSVSVQRHHAHSQSYKHKQELPPPVSKPD 59
          ++   VAG+  +  AA A    S  +  GM    S Q HH H Q+ +  Q+ P   S   
Sbjct: 16 HQSGSVAGHHHEQSAAAAAAYRSFPLSLGMSPYASSQHHHHHLQA-RPPQDSPYDASVAA 74

Query: 60 AIK 62
          A K
Sbjct: 75 ACK 77


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 141 PQPPPPVTHH 150
           P PPP  THH
Sbjct: 163 PPPPPVYTHH 172



 Score = 21.0 bits (42), Expect = 5.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 143 PPPPVTHHRHA 153
           PPPPV  H +A
Sbjct: 164 PPPPVYTHHYA 174


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 7   VAGNKVDAAYAVKSLSNVI 25
           VA    DAAY V ++SNV+
Sbjct: 175 VAAIPTDAAYDVPAMSNVL 193


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 43  QSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATR 80
           Q++   +EL   + K    K H+MR +  S      TR
Sbjct: 555 QAFSSLKELSNHMVKNSHYKEHIMRSITESGGRRRQTR 592


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 141 PQPPPPVT 148
           PQP PPVT
Sbjct: 178 PQPEPPVT 185


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 137 QNQIPQPPPP 146
           +N  P PPPP
Sbjct: 727 ENNAPPPPPP 736


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 143 PPPPVTHHR 151
           PPPP  HH+
Sbjct: 736 PPPPHPHHQ 744


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 143 PPPPVTHHR 151
           PPPP  HH+
Sbjct: 628 PPPPHPHHQ 636


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.130    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,913
Number of Sequences: 317
Number of extensions: 1497
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 165
length of database: 114,650
effective HSP length: 52
effective length of query: 113
effective length of database: 98,166
effective search space: 11092758
effective search space used: 11092758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)