Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000134-TA|BGIBMGA000134-PA|undefined
(165 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 27 1.1
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 1.4
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 27 1.9
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 27 1.9
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 2.5
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 3.3
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 4.3
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 25 5.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.5
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.5
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 24 9.9
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 24 9.9
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 27.5 bits (58), Expect = 1.1
Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 2/110 (1%)
Query: 46 KHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRALENQPDPRNFER-RTVFARPVTDE 104
KHKQE D I + R+ KS +++ Q FE + A V D
Sbjct: 617 KHKQEFGFIFENKDIIIDDI-RIRASGKSFQSKEPSVDAQLKELKFEPVQKSLATCVKDI 675
Query: 105 QXXXXXXXXXXXSADKRVMVTIVDGLPVVVTGQNQIPQPPPPVTHHRHAH 154
S D + TIV+G ++V I PP V H H
Sbjct: 676 YFEGGRVPSEVYSLDNLPVGTIVNGPSLIVDKTQTIVVPPKAVARILHTH 725
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.1 bits (57), Expect = 1.4
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 38 HHAHSQSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRALENQPDPRNFERRTVF 97
HHA+++ LPPP S P S + L RS P E P R +V
Sbjct: 83 HHANTEIDSSSSMLPPPSSDP--FSSPLSSSLHRSSPKRPHDSLGEESPG--KLLRTSVK 138
Query: 98 ARPVTDEQXXXXXXXXXXXSADKRV 122
P ++E+ S D +
Sbjct: 139 QEPDSEEEIDSPTKKKSFKSLDTSI 163
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 127 VDGLPVVVTGQNQIPQPPPPVTHHRHAHRDKSRRLNY 163
+DG P V Q PPPP HH+ H+ Y
Sbjct: 32 IDGKPNVQHQQPTYWYPPPPPRHHKE-HKKSHHHWEY 67
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 38 HHAHSQSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSH--TPATRALENQPDPRN 90
HH H + H P S + ++HV ++ + H +P+ + + P P N
Sbjct: 300 HHHHHHHHHHHSHDDDPSSPAEKKQNHVPSPSEKIQDHVPSPSEKKQDRVPSPSN 354
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 2.5
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 21 LSNVILPGMGHSVSVQRHHAHSQS-YKHKQELPPPVSKPDAIKSHVMRLLKRSKS 74
LS + LP GH +QR HA + Y + PVSK + I+ + +SKS
Sbjct: 252 LSEMGLPTDGHKQLLQRRHAKWVTLYNSNLDQKQPVSKRNLIRQLIDWERVQSKS 306
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 3.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 14 AAYAVKSLSNVILPGMGHSVSVQRHHAHSQSYKHKQELPPPVSK 57
A AVK+L I P + +V + ++YK K L P VS+
Sbjct: 579 APNAVKTLDEDITPQSSNWQTVAKQIIFPEAYKKKDALRPDVSE 622
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 48 KQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRAL 82
++ LPPP+++ +S LL++SK +T +T+AL
Sbjct: 390 REILPPPLNENSGSQSPSHSLLQKSK-NTSSTKAL 423
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 5.7
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 46 KHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRALENQP------DPRNFERRT--VF 97
KH+ +LP +S D S+ +++ + T A NQP P + +R + +
Sbjct: 175 KHESDLPLGLSPADTNISNATSIIEHPDAANAHTLASLNQPPKHLTVSPSSIQRLSPQPY 234
Query: 98 ARPVTDEQ 105
RP +DE+
Sbjct: 235 VRPTSDER 242
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 130 LPVVVTGQNQIPQPPPPVT 148
LP V + QIPQPPP T
Sbjct: 1061 LPPVSATRPQIPQPPPVST 1079
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 24.6 bits (51), Expect = 7.5
Identities = 15/71 (21%), Positives = 32/71 (45%)
Query: 26 LPGMGHSVSVQRHHAHSQSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRALENQ 85
LP ++++ H A Y+H EL +K D + + + R++S R ++
Sbjct: 598 LPVFSGPMTIRIHEADGTPYEHVVELKDSFTKLDIQYNTKYKRISRNRSTKNVKRDGDHN 657
Query: 86 PDPRNFERRTV 96
D ++ R++
Sbjct: 658 GDDSDYVIRSL 668
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 24.2 bits (50), Expect = 9.9
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 3 EVSCVAGNKVDAAYAVKSLSNVI--LPGMGHSVSVQRHHAHSQSYKHKQELPPPVSKP 58
E S KV A S V+ + H VS+ ++ + KHK +PP + P
Sbjct: 139 EASLQVAGKVGMTEAKSSTEEVVELRHQVRHQVSIPPNYDYVPISKHKSPIPPARTYP 196
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 51 LPPPVSKPDAIKSHVMRLLKRSKSHTPATRALENQPDPRNFERRTVFAR 99
+PP + + +KS R + P ++ PD N E+ ++F +
Sbjct: 213 IPPMILSEEEVKSQYFNDQSRLVTDCPKFYHFQSMPDIWNEEQHSIFVQ 261
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.130 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,636
Number of Sequences: 5004
Number of extensions: 26850
Number of successful extensions: 96
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 12
length of query: 165
length of database: 2,362,478
effective HSP length: 68
effective length of query: 97
effective length of database: 2,022,206
effective search space: 196153982
effective search space used: 196153982
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)
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