Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000134-TA|BGIBMGA000134-PA|undefined
(165 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.5
SB_41055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28) 28 4.4
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06) 28 4.4
SB_37193| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 27 7.7
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 27 7.7
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28) 27 7.7
>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 124 VTIVDGLPVVVTGQNQIPQPPPPVTHHRHAH 154
+TI++ + + N +P PP HH H H
Sbjct: 356 ITIINHQHIAIITINILPSPPSTYYHHHHQH 386
>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 376
Score = 28.7 bits (61), Expect = 2.5
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 5 SCVAGNKVDAAYAVKSLSNVILPGMGHSVSVQRHHAHSQSYKHKQELPPPVSKPDAIKSH 64
S G YA K+ + G V V+R HA S+ Y P K SH
Sbjct: 197 SAERGKDEQQTYACKTCQKIFCTPHGLEVHVRRSHASSRPYS-----CPTCGK---TFSH 248
Query: 65 VMRLLKRSKSHTPATRALENQPDPRNFERRTVFA 98
+ L++ K+H+ + R E + ++F+R + +
Sbjct: 249 YVSLIQHKKTHS-SVRLFECKKCGKHFKRSSTLS 281
>SB_41055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 28 GMGHSVSVQRHHAHSQSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRALEN-QP 86
G G S S + + A ++ K K+ P KP A K + K+ +P AL+
Sbjct: 113 GTGASGSFKLNKAAVKADKPKKAKKPAAKKPKAAKKPAAKTTPSKKAKSPKKPALKKATK 172
Query: 87 DPRNFERRTVFARP 100
P+ ++ V +P
Sbjct: 173 SPKKAAKKPVAKKP 186
>SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)
Length = 815
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 129 GLPVVVTGQN-QIPQPPPPVTHHRHAHRDKS 158
G P +G++ P PPPP+THH + S
Sbjct: 713 GSPPHNSGEHIDFPPPPPPLTHHSPTSQQNS 743
>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 43 QSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRALENQPDPRNFERRTVFARP-- 100
QSYK P P PD K + KRS A PD +RR R
Sbjct: 87 QSYKPSLRSPMPFLSPDVNKRLSFNVRKRSVLEQEEVEAGVASPDSHTSKRRKYHYRSAD 146
Query: 101 -VTDE 104
+TDE
Sbjct: 147 GITDE 151
>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
Length = 421
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 19 KSLSNVILPGMGHSVSVQRHHAHSQSYKHK-----QELPPPVSKPDAIKSHVMRLLKRSK 73
KS + ++P H++ HH + S H P+S IKSH +++ S
Sbjct: 295 KSCHHQVMPSSSHTIIKSHHHQVTPSSSHTIIKSWHHQVAPLSSHTIIKSHHHQVMP-SS 353
Query: 74 SHT 76
SHT
Sbjct: 354 SHT 356
>SB_37193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 19 KSLSNVILPGMGHSVSVQRHHAHSQSYKHKQELPPPVSKPDAIKS 63
K++ V+ P S+SV+ +H Y+ + PP V P I S
Sbjct: 35 KAIKLVLDPIAISSISVRSYHYFLHQYEIPSQFPPSVQDPITISS 79
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 18 VKSLSNVILPGMGHSVSVQRHHAHSQSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSHTP 77
+K +L G RH + S + + P + D + + R L+RS+ H P
Sbjct: 277 IKHKKKEVLKSRGKERDPLRHPSRDSSRERTKHGDGPTNFDDELSEY--RALQRSRQHKP 334
Query: 78 ATRALENQPDP 88
++R P
Sbjct: 335 SSRNTSRSRSP 345
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 119 DKRVMVTIVDGLPVVVTGQNQIPQPPPP 146
D R ++T G P T +P PPPP
Sbjct: 173 DARSVITCSPGSPTEDTPWTSVPPPPPP 200
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 129 GLP--VVVTGQNQIPQPPPPVTHHRH 152
G+P +++T + PPPP HH H
Sbjct: 783 GIPLLIIITSMLKSRHPPPPHHHHHH 808
>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
Length = 998
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 128 DGLPVVVTGQNQIPQPPPPVTHHRHAHRDKSRRLNY 163
+ LP N P P H H H+ SRR +Y
Sbjct: 427 ESLPDEALSGNSSSPPATPTKPHNHVHKRLSRRHSY 462
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.130 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,963,049
Number of Sequences: 59808
Number of extensions: 228217
Number of successful extensions: 881
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 850
Number of HSP's gapped (non-prelim): 37
length of query: 165
length of database: 16,821,457
effective HSP length: 77
effective length of query: 88
effective length of database: 12,216,241
effective search space: 1075029208
effective search space used: 1075029208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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