GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000134-TA|BGIBMGA000134-PA|undefined
         (165 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 43  QSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSHTP 77
           +S +    LP P+  P+AI   ++   ++ ++H P
Sbjct: 849 KSIEKGYRLPAPMDCPEAIYQLMLDCWQKERTHRP 883


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 137  QNQIPQPPPP 146
            Q Q P PPPP
Sbjct: 1352 QQQPPPPPPP 1361


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 42  SQSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSHTP 77
           ++S K  +E P P   P     H  +   R K H P
Sbjct: 261 AESMKTARENPGPPGVPGDHGDHAPKQTVRFKVHDP 296


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 136  GQNQIPQPPPPVTHHRHAHRDK 157
            G +++  PP P++  R   RD+
Sbjct: 1390 GSDRLTSPPTPLSISRAGSRDE 1411


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.130    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,199
Number of Sequences: 429
Number of extensions: 2271
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 165
length of database: 140,377
effective HSP length: 53
effective length of query: 112
effective length of database: 117,640
effective search space: 13175680
effective search space used: 13175680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)