GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000134-TA|BGIBMGA000134-PA|undefined
         (165 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31870.1 68414.m03917 expressed protein                             30   0.90 
At3g12820.1 68416.m01599 myb family transcription factor (MYB10)...    29   1.6  
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    29   1.6  
At3g22380.1 68416.m02825 expressed protein                             29   2.1  
At5g17910.1 68418.m02100 expressed protein                             27   6.3  
At5g04850.1 68418.m00508 SNF7 family protein contains Pfam domai...    27   6.3  
At2g18440.1 68415.m02146 expressed protein                             27   6.3  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   6.3  
At5g56890.1 68418.m07099 protein kinase family protein contains ...    27   8.4  
At1g12810.1 68414.m01488 proline-rich family protein contains pr...    27   8.4  

>At1g31870.1 68414.m03917 expressed protein
          Length = 561

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 19/63 (30%), Positives = 26/63 (41%)

Query: 31  HSVSVQRHHAHSQSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRALENQPDPRN 90
           HS S +     S S +   +L PP  K D   S V  + K+S   +P  R   + P P  
Sbjct: 212 HSPSRESSRKRSDSVELDDDLSPPRRKRDLHGSPVSDVKKKSNDLSPPRRRRYHSPSPEP 271

Query: 91  FER 93
             R
Sbjct: 272 ARR 274


>At3g12820.1 68416.m01599 myb family transcription factor (MYB10)
           similar to myb factor GI:1945279 from [Oryza sativa]
          Length = 239

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 8/15 (53%), Positives = 15/15 (100%)

Query: 50  ELPPPVSKPDAIKSH 64
           ++PPP+SKPD++++H
Sbjct: 193 QVPPPISKPDSLQTH 207


>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
           similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 131 PVVVTGQNQIPQPPPPVTHHRHAHRDKSRR 160
           P++   Q QI  PPPP   H HAH+ + ++
Sbjct: 386 PIMAIPQQQILPPPPP--SHPHAHQPEQKQ 413


>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 10  NKVDAAYAVKSLSNVILPGMGHSVSVQRHHAHSQSYKHKQELPP 53
           N + AA    SLSN    G G+      HH+H+ +++ K   PP
Sbjct: 135 NNISAASFSSSLSNHHNGGSGNLH--HHHHSHNNNHQRKNNFPP 176


>At5g17910.1 68418.m02100 expressed protein
          Length = 1342

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 117  SADKRVMVTIVDGLPVVVTGQNQIPQPPPP 146
            S D+  ++T  D LPVV     + PQP  P
Sbjct: 1162 SIDETNVITTSDVLPVVARSLEEFPQPSEP 1191


>At5g04850.1 68418.m00508 SNF7 family protein contains Pfam
          domain, PF03357: SNF7 family
          Length = 235

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 35 VQRHHAHSQSYKHKQELPPPVSKPDAIKSHVMRLLKRSKSHTPATRALENQ 85
          V+R  A    YK + +   P    +AIK+  MR+LK+ K +      L NQ
Sbjct: 35 VKRLDAELCKYKDQIKRTRPGPALEAIKARAMRVLKQKKMYEGQRDMLYNQ 85


>At2g18440.1 68415.m02146 expressed protein 
          Length = 75

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 21 LSNVILPGMGHSVSVQRHHAHSQSYKHKQEL 51
          L ++ LP + H +S    H HS++  HKQ L
Sbjct: 46 LCSISLPALSHFISFLNAHIHSKT-DHKQSL 75


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 31  HSVSVQRHHAHSQSYKHKQ 49
           HS   + HH HS S+KH++
Sbjct: 563 HSHKNEEHHQHSDSHKHEE 581


>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 128 DGLPVVVTGQNQIPQPPPPVTHHRHAHRDKSR 159
           D  P  V      P PPP  +HH+H H+++ +
Sbjct: 325 DSTPSNVHHHPSSPSPPPLSSHHQH-HQERKK 355


>At1g12810.1 68414.m01488 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 129

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 137 QNQIPQPPPPVTHHRHAHRD 156
           Q+  P PPPP  ++ H H D
Sbjct: 77  QHHGPPPPPPPQNYDHCHHD 96


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.130    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,019,893
Number of Sequences: 28952
Number of extensions: 149906
Number of successful extensions: 708
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 17
length of query: 165
length of database: 12,070,560
effective HSP length: 76
effective length of query: 89
effective length of database: 9,870,208
effective search space: 878448512
effective search space used: 878448512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)