Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000133-TA|BGIBMGA000133-PA|IPR007087|Zinc finger,
C2H2-type
(225 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 48 8e-07
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 46 5e-06
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 44 1e-05
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 44 1e-05
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 43 4e-05
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 42 1e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 38 0.001
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 37 0.003
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 36 0.004
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 35 0.008
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 34 0.020
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 32 0.060
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 32 0.079
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 30 0.24
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 29 0.42
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 29 0.73
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 28 0.97
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 1.7
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 1.7
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 26 3.9
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 5.2
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 6.8
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 6.8
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 25 6.8
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 25 9.1
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 48.4 bits (110), Expect = 8e-07
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 48 KSESSFEIHINKHEEKIVNKE---PRNVKQATTKDKSKADPSKPRCACDTCGRSFVDQRT 104
+S+S++ H N + V++ R + Q+ T S + + R C C + F +
Sbjct: 423 QSDSNYSDHHNNDKRAHVSRRHSTSRKIAQSHTGSSSTSSAANVRYRCTECLQGFSRPSS 482
Query: 105 LMWHQRLHSNERPYVCDV--CGRGF-VSLNRRNQHRV 138
L H H+ ERP+VCD CG+ F V N R R+
Sbjct: 483 LKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRI 519
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 46.0 bits (104), Expect = 5e-06
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 92 CDTCGRSFVDQRTLMWHQRLHSNERPYVCDVCGR--GFVSLNRRNQHRVCAHSAPSRR 147
CD C FV L H R+H N RPYVC+ R +LNR Q +C R+
Sbjct: 475 CDLCKAGFVRHHDLKRHLRIHENGRPYVCECLKRFNRLDALNRHKQRNICVGGVDRRQ 532
Score = 35.5 bits (78), Expect = 0.006
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 90 CACDTCGRSFVDQRTLMWHQRLHSNERPYVCDVCGRGFVSLNRRNQH 136
C + C + + + H + H ++RPY CD+C GFV + +H
Sbjct: 445 CLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRH 491
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 90 CACDTCGRSFVDQRTLMWHQRLHSNERPYVCDV--CGRGFVSLNRRNQHRVCAHSAPSRR 147
C + CG+ + L H R HSNERP+VCD C + F + H+ C +
Sbjct: 25 CPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFS 84
Query: 148 CPL--CPALFH 156
C C A F+
Sbjct: 85 CHYDGCDAQFY 95
Score = 35.5 bits (78), Expect = 0.006
Identities = 34/119 (28%), Positives = 41/119 (34%), Gaps = 12/119 (10%)
Query: 36 KKFTCYY--CGKMYKSESSFEIHINKH--EEKIVNKEPRNVKQATTKDKSKADPS----- 86
K F C Y CGK Y S E H+ H E V K K K
Sbjct: 21 KIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNV 80
Query: 87 KP-RCACDTCGRSFVDQRTLMWHQRLHSNERPYVC--DVCGRGFVSLNRRNQHRVCAHS 142
KP C D C F Q+ L H +H +PY C + C F + H H+
Sbjct: 81 KPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHT 139
Score = 34.3 bits (75), Expect = 0.015
Identities = 35/165 (21%), Positives = 57/165 (34%), Gaps = 17/165 (10%)
Query: 14 EICGMIFQSEDELSEHCDKKHTK--KFTCYY--CGKMYKSESSFEIHINKHEEKIVNKEP 69
E C F +L H HT + C Y C + ++ + H+N+ EKI++
Sbjct: 118 EGCDECFSKHQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSC 177
Query: 70 RNVKQATTKDKSKADPSKPRC------ACDTCGRSFVDQRTLMWHQRLH----SNERPYV 119
+ + K + +C CGR F L H LH + Y
Sbjct: 178 PHESCVGHEGFEKWSQLQNHIREAHVPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYH 237
Query: 120 CDV--CGRGFVSLNRRNQHRVCAHSA-PSRRCPLCPALFHLRSMV 161
C + C + F + +H H + C C F + M+
Sbjct: 238 CPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHML 282
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 44.4 bits (100), Expect = 1e-05
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 71 NVKQATTKDKSKADPSKP-----RCACDTCGRSFVDQRTLMWHQRLHSNERPYVCDV--- 122
N K + +K DP+ P + C+TC R+F L H R H+NE+P+ C
Sbjct: 46 NSKPVASSTAAKKDPNAPPQKVKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDG 105
Query: 123 ----CGRGFV--SLNRRNQHRVCAHSAPSRR 147
CGR F L R+Q ++ + P RR
Sbjct: 106 LPTGCGRQFSRRDLLLRHQQKIHRNPQPRRR 136
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 42.7 bits (96), Expect = 4e-05
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 64 IVNKEPRNVKQATTKDKSKADPSKPRCACDTCGRSFVDQRTLMWHQRLHSNERPYVCDVC 123
+V + N + K +SK+ + C C + F L H H+N RP+ C +C
Sbjct: 547 LVGNKSENSSSSKAKSESKSQGNYV-CTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSIC 605
Query: 124 GRGFVSLNRRNQHRVCAHSAPSRRCPLCPALFHLRSMVN 162
+ F + + +H + C C F +N
Sbjct: 606 KKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALN 644
Score = 37.1 bits (82), Expect = 0.002
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 92 CDTCGRSFVDQRTLMWHQRLHSNERPYVCDVCGRGFVSLNRRNQH 136
C C +SF Q H++LH+ + + C C + F ++ N+H
Sbjct: 602 CSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRH 646
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 67 KEPRNVKQATTKDKSKADPSKPRCACDTCGRSFVDQRTLMWHQR-LHSNERPYVCDVCGR 125
K + + + K P C C + F L H R LH++E+P+VC +CG+
Sbjct: 400 KRRKRRQPSNRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGK 458
Query: 126 GFVSLNRRNQH-RVCAHSAPSRRCPLCPALFH 156
F + QH R+ +++P C P+ ++
Sbjct: 459 RFSRRDNLRQHERLHVNASPRLACFFQPSGYY 490
Score = 32.7 bits (71), Expect = 0.045
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 12 ICEICGMIFQSEDELSEHCDKKHT--KKFTCYYCGKMYKSESSFEIHINKHEEKIVNKEP 69
+C C F+ + L H HT K F C CGK + ++ +HE VN P
Sbjct: 424 VCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRD----NLRQHERLHVNASP 478
Query: 70 R 70
R
Sbjct: 479 R 479
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 90 CACDTCGRSFVDQRTLMWHQRLHSNERPYVCDVCGRGFVSLNRRNQH 136
C C +SF + L H+R H N + + C C R F + N+H
Sbjct: 28 CTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRH 74
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 13 CEICGMIFQSEDELSEHCDKKHTKKFTC-YYCGK----MYKSESSFEIHINK 59
CE C F +DEL +HC +KH + + C G+ +K+ S E H K
Sbjct: 247 CEFCNTHFYDDDELFKHCREKHERCYICDQVAGRPTHQYFKNYDSLERHFEK 298
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 87 KPRCACDTCGRSFVDQRT---LMWHQRLHSNERPYVCDV--CGRGFVSLNRRNQHRVCAH 141
K C D C R + Q + L+ H R H+ E+P++C V C R F + +H H
Sbjct: 72 KYTCEWDDCPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131
Query: 142 SAPSRR 147
A + R
Sbjct: 132 EADTLR 137
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 35.1 bits (77), Expect = 0.008
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 80 KSKADPSKPR-CACDTCGRSFVDQRTLMWHQRLHSNERPYVCDV--CGRGFVSLNRRNQH 136
+S +P PR C C ++F H R H+ E+P+VC C + F + +H
Sbjct: 15 RSTKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRH 74
Query: 137 RVCAHSAPSRR 147
+A SRR
Sbjct: 75 ARIHTNANSRR 85
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 33.9 bits (74), Expect = 0.020
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 89 RCACDTCGRSFVDQRTLMWHQRLHSNERPYVCDVCGRGFVS---LNRR-NQHRVCAHSAP 144
+C C +SF + H R H+N + ++C C F LNR NQ V + A
Sbjct: 18 KCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQNDAG 77
Query: 145 SRRCP 149
S+ P
Sbjct: 78 SQTHP 82
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 12 ICEICGMIFQSEDELSEHCDKKHTKK 37
IC C F D L+ H ++KH K+
Sbjct: 48 ICPHCSSSFTRSDVLNRHVNQKHVKQ 73
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 32.3 bits (70), Expect = 0.060
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 65 VNKEPRNVKQATTK--DKSKADPSKPRCACDTCGRSFVDQRTLMWHQRLHSNERPYVCDV 122
V++ NV A K + S D SK CD C + F L H+ HS P C
Sbjct: 5 VSENSTNVLSAKRKLTEPSLID-SKRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPY 63
Query: 123 C 123
C
Sbjct: 64 C 64
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 111 LHSNERPYVCDVCGRGFVSLNRRNQHRVCAHSAPSRRCPLC 151
L ++R + CD C + F +H+ C A CP C
Sbjct: 24 LIDSKRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYC 64
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 31.9 bits (69), Expect = 0.079
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 108 HQRLHSNERPYVCDVCGRGFVSLNRRNQHRVCAH 141
HQ +PY C+VC + + +LN HR +H
Sbjct: 389 HQGFVVENKPYRCEVCSKRYKNLNGLKYHRTHSH 422
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 30.3 bits (65), Expect = 0.24
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 73 KQATTKDKSKADPSKPRCACDT--CGRSFVDQRTLMWHQRLHSNERPYVCDVCGRGFVSL 130
KQA K K + D S + T R +D L++H + ++C C + F+S+
Sbjct: 374 KQAL-KGKRQYDTSTSKAELSTPPSKRRHIDDADLVFHSSPLLSRSRFICCYCTKPFLSI 432
Query: 131 NRRNQHR-VCAH 141
++ +H C+H
Sbjct: 433 SKLQEHESSCSH 444
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 29.5 bits (63), Expect = 0.42
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 22 SEDELSEHCDKKHTKKFTCYYCGKMYKSESSFEIHIN-KHEEKIVNKEPRNVKQATTKDK 80
S D+ S + ++ C C K ++S++ E H N K +K + K + +K+ + +
Sbjct: 254 SSDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHAKEAQ 313
Query: 81 SKADPSK 87
A+ +K
Sbjct: 314 KNAESNK 320
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 12 ICEICGMIFQSEDELSEH-CDKKHTKKFTCYYCG-KMYKSESSFEIHINKHEEKIVNKEP 69
+C +C F+S+++L H KKH K K + E+ NK E ++ P
Sbjct: 271 MCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHAKEAQKNAESNKQPEDAPSESP 330
Query: 70 RNVKQATT 77
+ K +++
Sbjct: 331 YSNKVSSS 338
>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 346
Score = 28.7 bits (61), Expect = 0.73
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 8 DAVHICEICGMIFQSEDELSEHCDKKHTKKFTCYYCGKMYKSESSFEIHINK 59
D + + +I F S+ ++ + KH+K+F+ Y GK+Y S INK
Sbjct: 62 DWIFLVDILNFSFWSDVDVED--SGKHSKRFSIEYKGKLYTGYWSLCAAINK 111
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 28.3 bits (60), Expect = 0.97
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 47 YKSESSFEIHINKHEEKIVNKEPRNVKQATTKDKSKADPSKPRCACD-TCGRSFVDQRTL 105
+ ++ ++ NK + +++PR+VK+ TT+ + PS A C +++
Sbjct: 82 HNEQNDSHVNANKSSSETSSEKPRSVKKPTTRKRKVYVPSYRSGAYSILCALYMLNKHEF 141
Query: 106 MWHQRLHSNERPYVCDVCGRGFVSLNRRNQHRVCAHSA 143
++ + +PY C F S RN R A SA
Sbjct: 142 ATKPQIVTMAQPY----CDSSFGSATDRNM-RYTAWSA 174
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 92 CDTCGRSFVDQRTLMWHQRLHSNERPYVCDV--CGRGFVSLNRRNQH 136
C C R F Q + H R H+ E+P+ C C + F + +H
Sbjct: 6 CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRH 52
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 1 MRCSVQADAVHICEICGMIFQSEDELSEHCDKKHTKK---FTCYYCG 44
+RC++Q EIC +F +L H D H K F C CG
Sbjct: 572 VRCTLQNRVTG--EICNTVFSRTYDLIRHQDTIHAKTRPVFRCEICG 616
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 76 TTKDKSKADPSKPRCACDTCGRSFVDQRTLMWHQRLHSNERPYVCDVCG 124
T +D+ + D C C + F L L +NE + C+VCG
Sbjct: 122 TVEDRMRNDFDSKGYVCPFCNKKFSSLDVLS----LVTNEGTFACNVCG 166
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 1 MRCSVQADAVHICEICGMIFQSEDELSEHCDKKHTK 36
+RC V + EI G + S DEL +H H K
Sbjct: 661 IRCWVDEYMTWVAEIGGYLDDSYDELEQHHANFHNK 696
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 3 CSVQADAVHICEICGMIFQSEDELSEHCDKKHTKKFTCYYCGKMYKSESSFEIHINKHEE 62
CS+ H ++ I ++ H DKK + F YY + SS + +++
Sbjct: 322 CSIYGRE-HEIKLIRKILRNSPRAINHQDKKDLETFNPYYLNAIESESSSQSLSLSQRAS 380
Query: 63 KIV 65
+++
Sbjct: 381 EVM 383
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 6.8
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 40 CYYCGKMYKSESSFEIHINK--H------EEKIVNKEPRNVKQATTKDKSKADPSKPR 89
C C K+ S E H K H EE+I + P +KQA + KA K +
Sbjct: 5 CLECDKLLSSIEMAEFHSTKTSHDQFEETEEEIKKRSPEELKQAIEALREKAKEKKEK 62
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 6 QADAVHICEICGMIFQSEDELSEH-CDKKH 34
+A+ CE+C F SE S H KKH
Sbjct: 65 KAEFYQNCEVCNKKFYSEGAYSSHMASKKH 94
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 58 NKHEEKIVN---KEPRNVKQATTKDKSKADPS 86
N EE + N EP N K+ T++ SK D S
Sbjct: 474 NASEEPVANGIKSEPENEKKLKTEETSKTDDS 505
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.132 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 985,477
Number of Sequences: 5004
Number of extensions: 37162
Number of successful extensions: 160
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 43
length of query: 225
length of database: 2,362,478
effective HSP length: 70
effective length of query: 155
effective length of database: 2,012,198
effective search space: 311890690
effective search space used: 311890690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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