Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000131-TA|BGIBMGA000131-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR010978|tRNA-binding arm,
IPR001412|Aminoacyl-tRNA synthetase, class I, IPR002303|Valyl-tRNA
synthetase, class Ia, IPR002300|Aminoacyl-tRNA synthetase, class Ia,
IPR013155|tRNA synthetase, valyl/leucyl, anticodon-binding
         (989 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    26   1.1  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    24   5.9  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    23   7.8  

>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 739 IRTLIYNEFCDIYLEASKPGFENDNVRIGYAHAHTLSAVLNTSLRCLYPFMVYITQ 794
           I+  +Y E  DI+ ++ +P   ND +++ Y     L  VL  +LR +YP +  IT+
Sbjct: 18  IQEKVYQELRDIFQDSDRPITFNDTLQMKY-----LERVLLETLR-MYPPVPIITR 67


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query: 290 KRVIHPFRTNETIPIIFDKFVDREFGTGAVKITPAHSKVD 329
           +R+  P +T +++ +  D+ V        ++  P H K D
Sbjct: 34  RRLRRPLKTTQSVSVTKDQDVSSSVNRFRLRSRPGHRKTD 73



 Score = 23.8 bits (49), Expect = 5.9
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 898 NGKD-DKTYVKGILDLNTEIYVELVGDDIENAITNAKNKLEKRIKKLEDSLNNMEEKYSN 956
           N KD D   + G ++ + E  +E     ++ ++    N++ K  KKL    + + +K   
Sbjct: 463 NAKDVDWQKIAGAVEEDDEDAIEKPAP-VKISVQEVLNRVRKPTKKLHLKNSPISKKVRP 521

Query: 957 SNYLTTIPEWTQVR 970
              L  I  W+Q R
Sbjct: 522 PQVLCYITSWSQKR 535


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 832 NEIIEEQAEKILNAVNLIRE 851
           +EI EE  E +++ +NLI+E
Sbjct: 19  SEISEETCETLMSDINLIKE 38


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,524
Number of Sequences: 317
Number of extensions: 10766
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 4
length of query: 989
length of database: 114,650
effective HSP length: 63
effective length of query: 926
effective length of database: 94,679
effective search space: 87672754
effective search space used: 87672754
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)