Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000130-TA|BGIBMGA000130-PA|IPR001611|Leucine-rich
repeat, IPR003591|Leucine-rich repeat, typical subtype
         (370 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    38   2e-04

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 37.5 bits (83), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 5/137 (3%)

Query: 86  TEIGNLKNLVNLNLSYNPLNVLIPEIG---DLEKLEAFWCNRIGLKEIPKEIGKLTQLDT 142
           T +G L+N+  L+LS+N +  +  +     +L  ++ +  +   L       G +  L  
Sbjct: 217 TGLGGLQNIKVLDLSFNNITSVAKQFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQV 276

Query: 143 FGARGNELKTIP-EEMTSLAKLRWLTLENNQIETLPDTMDRMTA-LVHCNLRNNRLEQFP 200
                N L  +  +   +  KL+WL   +N+I  +P+ + R    L   +  +NRL   P
Sbjct: 277 LDLSHNSLYELDFDTFRNTKKLQWLDTSHNRISEIPNDLFRFLGNLRIVDFSHNRLRSLP 336

Query: 201 SSILKCKELMFLQLNSN 217
            ++ +   L  L ++ N
Sbjct: 337 DNLFRETGLERLDVSHN 353



 Score = 33.9 bits (74), Expect = 0.002
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 135 GKLTQLDTFGARGNELKTIPEEMTSLAKLRWLTLENNQIETLPDT--MDRMTALVHCNLR 192
           G ++ L       N+L  +P    SL +LR L+LE N I TL +T  +     L   NL+
Sbjct: 487 GNISSLRYLNLDYNDLSAVPIVTHSLTELRHLSLEGNPITTLSNTSLLGAANQLEELNLK 546

Query: 193 NNRLEQFPSSILKCK 207
           N  L    S    CK
Sbjct: 547 NIDLTVLESGAF-CK 560



 Score = 29.5 bits (63), Expect = 0.040
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 37  EIPGLLYTCLEVEHLYLHKNKISVFPVEXXXXXXXXXXXXXXXXXXXXPTEI-GNLKNLV 95
           EI GL +  LE   L+L+ + +S+  V                       E+ GN+ +L 
Sbjct: 434 EINGLSFQGLEYTLLHLNLDNVSLSQVPALSTPNLLSLSLAFNSLPTVALEVAGNISSLR 493

Query: 96  NLNLSYNPLNVL 107
            LNL YN L+ +
Sbjct: 494 YLNLDYNDLSAV 505



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 133 EIG-KLTQLDTFGARGNELKTIPEEMTS-LAKLRWLTLENNQIETLPD-TMDRMTALVHC 189
           +IG  L  L    A  + ++  P +    L +L  L L NN++  +PD +   + +L   
Sbjct: 12  DIGDSLLTLKLTHALSSSVQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKV 71

Query: 190 NLRNNRLE 197
           +L++N +E
Sbjct: 72  HLQDNTIE 79


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,027
Number of Sequences: 317
Number of extensions: 2647
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 370
length of database: 114,650
effective HSP length: 58
effective length of query: 312
effective length of database: 96,264
effective search space: 30034368
effective search space used: 30034368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)