Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000130-TA|BGIBMGA000130-PA|IPR001611|Leucine-rich
repeat, IPR003591|Leucine-rich repeat, typical subtype
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 51 2e-07
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 51 2e-07
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 46 6e-06
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 42 1e-04
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 36 0.012
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 32 0.11
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 30 0.46
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 27 3.2
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.6
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 26 9.8
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 26 9.8
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 9.8
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 26 9.8
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 51.2 bits (117), Expect = 2e-07
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 117 LEAFWCNRIGLKEIPKEIGKLTQLDTFGARGNELKTIPEEMTSLAKLRWLTLENNQIETL 176
L + N L +P EIGKL L A GN +KTIP E+ L +LR + L +N I +
Sbjct: 183 LTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVI 242
Query: 177 PDTMDRMTALVHCNLRNNRLE 197
P + + L + N L+
Sbjct: 243 PAELGTLFQLKILGIEGNPLQ 263
Score = 50.0 bits (114), Expect = 5e-07
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 86 TEIGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFGA 145
T++ L L +++N L L PEIG L+ L + +K IP E+G LT+L
Sbjct: 175 TDLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLL 234
Query: 146 RGNELKTIPEEMTSLAKLRWLTLENNQIE 174
N + IP E+ +L +L+ L +E N ++
Sbjct: 235 FDNMISVIPAELGTLFQLKILGIEGNPLQ 263
Score = 50.0 bits (114), Expect = 5e-07
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 85 PTEIGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFG 144
P EIG LKNLV L+ S N + + PE+G L +L + IP E+G L QL G
Sbjct: 197 PPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAELGTLFQLKILG 256
Query: 145 ARGNELKTI 153
GN L+ +
Sbjct: 257 IEGNPLQDV 265
Score = 39.5 bits (88), Expect = 7e-04
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 125 IGLKEIPKEIGKLTQLDTFGARGNELKTIPEEMTSLAKLRWLTLENNQIETLPDTMDRMT 184
IGL+ + ++ K + L N L +P E+ L L L N I+T+P + +T
Sbjct: 168 IGLRNVSTDLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLT 227
Query: 185 ALVHCNLRNNRLEQFPSSILKCKELMFLQLNSN 217
L L +N + P+ + +L L + N
Sbjct: 228 ELREVLLFDNMISVIPAELGTLFQLKILGIEGN 260
Score = 31.1 bits (67), Expect = 0.26
Identities = 23/105 (21%), Positives = 42/105 (40%)
Query: 28 LSLNGFEITEIPGLLYTCLEVEHLYLHKNKISVFPVEXXXXXXXXXXXXXXXXXXXXPTE 87
L L G + + L+ + LY++ N ++ P E P E
Sbjct: 163 LDLGGIGLRNVSTDLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPE 222
Query: 88 IGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEIPK 132
+G L L + L N ++V+ E+G L +L+ L+++ K
Sbjct: 223 LGLLTELREVLLFDNMISVIPAELGTLFQLKILGIEGNPLQDVYK 267
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 51.2 bits (117), Expect = 2e-07
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 127 LKEIPKEIGKLTQLDTFGARGNELKTIPEEMTSLAKLRWLTLENNQIETLPDTMDRMTAL 186
+K I EI K T+L R N L+ PE + L L L + N+I+ LP++ + L
Sbjct: 64 IKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNL 123
Query: 187 VHCNLRNNRLEQFPSSILKCKELMFLQLNSNQEHALIKYTDEATTQTSDSNGSL 240
++ NRL + P+ I L L++ +N H + A DS+ L
Sbjct: 124 KVLSISKNRLFELPTYIAHMPNLEILKIENN--HIVFPPPHIANNDLQDSDMQL 175
Score = 45.2 bits (102), Expect = 1e-05
Identities = 26/103 (25%), Positives = 48/103 (46%)
Query: 94 LVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFGARGNELKTI 153
+ L L +N + + PEI +L L+E P+ + +L L+ N++K +
Sbjct: 54 IARLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQL 113
Query: 154 PEEMTSLAKLRWLTLENNQIETLPDTMDRMTALVHCNLRNNRL 196
PE +L L+ L++ N++ LP + M L + NN +
Sbjct: 114 PESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIENNHI 156
Score = 44.0 bits (99), Expect = 3e-05
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 123 NRIGLKEIPKEIGKLTQ--LDTFGARGNELKTIPEEMTSLAKLRWLTLENNQIETLPDTM 180
+ + L+E+P E + Q + N +K+I E+ +LR+L + +N + P+++
Sbjct: 35 SHLNLRELPYEQLERIQGRIARLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFPESL 94
Query: 181 DRMTALVHCNLRNNRLEQFPSSILKCKELMFLQLNSNQEHALIKY 225
R+ +L ++ N+++Q P S L L ++ N+ L Y
Sbjct: 95 CRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTY 139
Score = 40.3 bits (90), Expect = 4e-04
Identities = 26/87 (29%), Positives = 37/87 (42%)
Query: 87 EIGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFGAR 146
EI L LN+ N L + LE LE +R +K++P+ G L L
Sbjct: 70 EILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSIS 129
Query: 147 GNELKTIPEEMTSLAKLRWLTLENNQI 173
N L +P + + L L +ENN I
Sbjct: 130 KNRLFELPTYIAHMPNLEILKIENNHI 156
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 46.4 bits (105), Expect = 6e-06
Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 97 LNLSYNPLNVLIPEIG--DLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFGARGNELKTIP 154
++ S+ PL + P +L + IGLK+ I L ++T N +I
Sbjct: 642 IDFSFCPLTTIDPAFSYSNLVYFDISHAKLIGLKD--SVIETLVNVETVKVNYNHFTSIS 699
Query: 155 EEMTSLAKLRWLTLENNQIETLPDTMDRMTALVHCNLRNNRLEQFPSSILKCKELMFLQL 214
+ ++++ L++L+ N ++ + + ++ LVH +L N ++ FP + + L + L
Sbjct: 700 DAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVNL 759
Query: 215 NSN 217
+SN
Sbjct: 760 SSN 762
Score = 42.3 bits (95), Expect = 1e-04
Identities = 21/89 (23%), Positives = 41/89 (46%)
Query: 88 IGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFGARG 147
I L N+ + ++YN + I ++ L+ C + + +GKL L
Sbjct: 679 IETLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHA 738
Query: 148 NELKTIPEEMTSLAKLRWLTLENNQIETL 176
N +K PEE+ ++ L+ + L +N +E +
Sbjct: 739 NNIKIFPEEVWQVSSLKVVNLSSNILEKI 767
Score = 40.3 bits (90), Expect = 4e-04
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Query: 28 LSLNGFEITEIPGLLYTCLE---VEHLYLHKNKISVFPVEXXXXXXXXXXXXXXXXXXXX 84
L+++ +I E+ L+++ L ++ L + NK+ P
Sbjct: 481 LNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTF 540
Query: 85 PTEIGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGL-KEIPKEIGKLTQLDTF 143
P I L L LN S+N L+ + +IG L KL+ + L +P+EIG L L+T
Sbjct: 541 PLIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETI 600
Query: 144 GARGNELKTI 153
N + I
Sbjct: 601 DLSYNAITNI 610
Score = 39.5 bits (88), Expect = 7e-04
Identities = 47/222 (21%), Positives = 80/222 (36%), Gaps = 13/222 (5%)
Query: 8 IRENHILALIEQAIAKKKSR-LSLNGFEITEIPGLLYTCLEVEHLYLHKNKISVFPVEXX 66
+ NH ++ + A + + LS E++ + L + HL LH N I +FP E
Sbjct: 690 VNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVW 749
Query: 67 XXXXXXXXXXXXXXXXXXPTEIGNLKNLVNL--------NLSYNPLNVLIPEIGDLEKLE 118
+ K L LS NP++ L + + +E
Sbjct: 750 QVSSLKVVNLSSNILEKIKLPVATSKKLTRTISQLKIMRTLSGNPVSSLSSQEFVMPTVE 809
Query: 119 AFWC--NRIGLKEIPKEIGKLTQLDTFGARGNELKTIPEEM-TSLAKLRWLTLENNQIET 175
+ NR+G + + L N L IP + + + L+ L + N++
Sbjct: 810 ELYLVDNRLG-NDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELAN 868
Query: 176 LPDTMDRMTALVHCNLRNNRLEQFPSSILKCKELMFLQLNSN 217
L + L NRL FP + K L FL +++N
Sbjct: 869 LSISSTAQVLLETLYANGNRLSSFPKNEALSKSLRFLDISTN 910
Score = 37.5 bits (83), Expect = 0.003
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 91 LKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFGARGNEL 150
L NL L+LSYN I +L +LE + L +I +IG L +L + N+L
Sbjct: 524 LVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDL 583
Query: 151 KT-IPEEMTSLAKLRWLTLENNQIETLPDTMD--RMTAL-VHCNL 191
+P+E+ L L + L N I + + ++ ++ V CNL
Sbjct: 584 SNRLPQEIGLLKNLETIDLSYNAITNIASLSECPKLNSINVACNL 628
Score = 33.9 bits (74), Expect = 0.037
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Query: 94 LVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEI-PKEIGKLTQ--LDTFGARGNEL 150
L L++S N + I L +LE +R + E+ P L++ L N+L
Sbjct: 455 LKRLDISNNLRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKL 514
Query: 151 KTIPEEMTSLAKLRWLTLENNQIETLPDTMDRMTALVHCNLRNNRLEQFPS---SILKCK 207
+P L L +L L N T P + ++ L N +N L Q S S++K K
Sbjct: 515 FFLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKIGSLVKLK 574
Query: 208 ELMFLQLN 215
L +LQ N
Sbjct: 575 HL-YLQFN 581
Score = 32.7 bits (71), Expect = 0.085
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 94 LVNLNLSYN-PLNVLIPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFGARGNELKT 152
L++LN+S+N L++ + + KL+ + K I L QL+ N++
Sbjct: 431 LISLNVSHNLSLDLPLDFMERCVKLKRLDISNNLRSPRGKPITALRQLEVLNMSRNDIYE 490
Query: 153 I-PEEMTSLAK--LRWLTLENNQIETLPDTMDRMTALVHCNLRNNRLEQFPSSILKCKEL 209
+ P + L++ L+ L + NN++ LP + + L + +L N FP I + +L
Sbjct: 491 LDPLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQL 550
Query: 210 MFLQLNSN 217
L + N
Sbjct: 551 ETLNFSHN 558
Score = 31.1 bits (67), Expect = 0.26
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 86 TEIGNLKNLVNLNLSYNPLNVLIPEI-GDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFG 144
T + K L LNLSYN L + + + L+ + + L + L+T
Sbjct: 824 TALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELANLSISSTAQVLLETLY 883
Query: 145 ARGNELKTIPEEMTSLAKLRWLTLENNQIETL 176
A GN L + P+ LR+L + N ++ L
Sbjct: 884 ANGNRLSSFPKNEALSKSLRFLDISTNNLQNL 915
Score = 29.9 bits (64), Expect = 0.60
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 21/153 (13%)
Query: 85 PTEIGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAF--WCNRIGLKE--------IPKEI 134
P EIG LKNL ++LSYN + I + + KL + CN + E I
Sbjct: 588 PQEIGLLKNLETIDLSYNAI-TNIASLSECPKLNSINVACNLLSFYEYSNPSATFIDFSF 646
Query: 135 GKLTQLDTFGARGN-------ELKTI---PEEMTSLAKLRWLTLENNQIETLPDTMDRMT 184
LT +D + N K I + +L + + + N ++ D + M
Sbjct: 647 CPLTTIDPAFSYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYNHFTSISDAISAMQ 706
Query: 185 ALVHCNLRNNRLEQFPSSILKCKELMFLQLNSN 217
L + + N + ++ K K L+ L L++N
Sbjct: 707 NLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHAN 739
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 41.9 bits (94), Expect = 1e-04
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 88 IGNLKNLVNLNLSYNPLNVLIPEIGDLEKLE--AFWCNRIGLKEIPKEIGKLTQLDTFGA 145
+ N+KNL L+LS+N + I I L+ LE F NRI E + + +LT L+
Sbjct: 100 LDNVKNLTYLDLSFNNIKT-IRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLE---L 155
Query: 146 RGNELKTIPEEMTSLAKLRWLTLENNQIETLPDTMDRMTALVHCNLRNNRLEQF 199
GN+++ I E + +L L L + N+I T + +++ L ++++NR+ QF
Sbjct: 156 GGNKIRVI-ENLDTLVNLEKLWVGKNKI-TKFENFEKLQKLSLLSIQSNRITQF 207
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 35.5 bits (78), Expect = 0.012
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Query: 86 TEIGNLKNLVNLNLSYNPLNVL--IPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTF 143
T + +L +L L + N L L I + L KL A CN +KE+ L +L+
Sbjct: 684 TGLSSLIHLRELKVDSNHLWSLDGIQHLDGLLKLSA--CNN-RIKELSFTNSNLHRLEEL 740
Query: 144 GARGNELKTIPEEMTSLAKLRWLTLENNQIETLPDTMDRMTALVHCNLRNNRLEQFPSSI 203
NE++ I EE++SL L L L+NN++ L + M L + NN + Q
Sbjct: 741 LLGNNEIEEI-EEISSLQNLMVLQLDNNKLTNLKASQP-MIHLRILRISNNAIHQLEVDQ 798
Query: 204 LKCKELMFLQLN 215
+++ LN
Sbjct: 799 FPHLRTLYMDLN 810
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 32.3 bits (70), Expect = 0.11
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 122 CNRIGLKEIPKEIG-KLTQLDTFGARGNELKTIPEEMTSLAKLRWLTLENNQI 173
C+ LK IPK + L L + GNEL IP + L +L L L +N+I
Sbjct: 339 CSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKI 391
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 30.3 bits (65), Expect = 0.46
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 8/139 (5%)
Query: 99 LSYNPLNVLIP-EIGDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFGARGNELKT----- 152
L+ N LN+L+ E+ L++ + I LK EIGK+T F E K+
Sbjct: 1061 LNLNSLNLLLKSELFQLDQCYSLSLYLIHLKSEVDEIGKVTDFKIFSVNNTEFKSQVYLY 1120
Query: 153 IPEEMTSLAKLRWLTLENNQIETLPDTMDRMTALVHCNLRNNRLEQFPSSILKCKELMFL 212
+ E + +L L L + D ++L + N E +S+ K+
Sbjct: 1121 LREWINALFDRFTFLLGKESEHLLNELDDTHSSLSTVDFTVNNTESLINSLKIFKKAGCY 1180
Query: 213 QLNSNQEHALIKYTDEATT 231
+L N EH +I Y + T
Sbjct: 1181 KL--NVEHKIITYQNYEMT 1197
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 27.5 bits (58), Expect = 3.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 119 AFWCNRIGLKEIPKEIGKLTQLD 141
AF+C R+G+ E+P+ + + +D
Sbjct: 915 AFFCQRLGINELPQSVAFFSSVD 937
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 226 TDEATTQTSDSNGSLASAMPSTSRVYGAQAL 256
TD+AT TSDS+ S +++ S+S A +L
Sbjct: 297 TDDATNTTSDSSSSSSASASSSSSSSSAASL 327
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 306 QYQSEDDIDDNDVSGHDKPADNPIAGP 332
QY S I + G +PA P+ GP
Sbjct: 59 QYSSTQPISSAKILGKGRPAPKPLGGP 85
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 337 WDSGLAFSLKIKSKAIREGNVGKGDF 362
W GLAF LK K++ E + DF
Sbjct: 356 WGGGLAFQLKYTRKSVAESDFVVTDF 381
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.8 bits (54), Expect = 9.8
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 123 NRIGLKEIPKEIGKLTQLDTFGARGNELKTIPE--EMTSLA 161
N I L EIG + L+TF + G + T PE E+ LA
Sbjct: 306 NAIPLSAQNSEIGHVNPLETFTSNGRKRLTSPEIWELQQLA 346
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 233 TSDSNGSLASAMPSTSRVYGAQALALNAT 261
TS GS+ + PS+ YG ALN T
Sbjct: 140 TSSLAGSMGAFFPSSQSAYGQSKAALNYT 168
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,135
Number of Sequences: 5004
Number of extensions: 58787
Number of successful extensions: 202
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 32
length of query: 370
length of database: 2,362,478
effective HSP length: 74
effective length of query: 296
effective length of database: 1,992,182
effective search space: 589685872
effective search space used: 589685872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
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