GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000130-TA|BGIBMGA000130-PA|IPR001611|Leucine-rich
repeat, IPR003591|Leucine-rich repeat, typical subtype
         (370 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    38   2e-04
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    28   0.15 

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 37.5 bits (83), Expect = 2e-04
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 113 DLEKLEAFWCNRIGLKEIPKE-IGKLTQLDTFGARGNELKTIPEEM-TSLAKLRWLTLEN 170
           DL +L+     R  + EI  + +  LT L TF A  N L ++PE +  S   LR + L  
Sbjct: 235 DLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAY 294

Query: 171 NQIETLP-DTMDRMTALVHCNLRNNRL 196
           N +  LP     R+  L+  NL  NRL
Sbjct: 295 NGLRDLPKGIFTRLEQLLVLNLAGNRL 321



 Score = 30.7 bits (66), Expect = 0.021
 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 4/142 (2%)

Query: 91  LKNLVNLNLSYNPLNVLIPEI-GDLEKLEAFWCNRIGLKEI-PKEIGKLTQLDTFGARGN 148
           L NL  L LS N L  +  ++   L  L     +   +  I P      + L      GN
Sbjct: 382 LYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGN 441

Query: 149 ELKTIPEEMTSLAKLRWLTLENNQIETLPD-TMDRMTALVHCNLRNNRLEQFPSSIL-KC 206
           EL ++P+ +  LA L+ L L  N+I    + +   +  L    L  N +      +L   
Sbjct: 442 ELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDL 501

Query: 207 KELMFLQLNSNQEHALIKYTDE 228
             L  L L  N+   + +Y  E
Sbjct: 502 PNLQILNLARNKVQHVERYAFE 523



 Score = 30.3 bits (65), Expect = 0.028
 Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 6/226 (2%)

Query: 28  LSLNGFEITEIPGLLYTCLEVEHLYLHKNKISVFPVEXXXXXXXXXXXXXXXXXXXXPTE 87
           L L+G E+T +P  L     ++ L L +N+IS F                        + 
Sbjct: 436 LDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSR 495

Query: 88  --IGNLKNLVNLNLSYNPLNVLIPEIGDLE-KLEAFWCNRIGLKEIPKEIGKLTQLDTFG 144
             + +L NL  LNL+ N +  +     +   +LEA   +   L +I      +  L    
Sbjct: 496 GMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLN 555

Query: 145 ARGNELKTIPEEMTSLAKLRWLTLENNQIETLPDTMD-RMTALVHCNLRNNRL-EQFPSS 202
              N ++           L+WL +  N IE+L +    R + +   +  +NR+ E  P S
Sbjct: 556 LSENHIEWFDYAFIP-GNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPLS 614

Query: 203 ILKCKELMFLQLNSNQEHALIKYTDEATTQTSDSNGSLASAMPSTS 248
           +    EL+F+  N         +TD+      D   ++   M  TS
Sbjct: 615 VPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMIETMELTS 660


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 0.15
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 87  EIGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIG 126
           E+GN   +V +N S NP+ V + ++     L  + CN +G
Sbjct: 501 ELGNDTVIVMMNFSKNPVTVNLTKLHPPADLVVYACNVVG 540


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,631
Number of Sequences: 429
Number of extensions: 3096
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 370
length of database: 140,377
effective HSP length: 59
effective length of query: 311
effective length of database: 115,066
effective search space: 35785526
effective search space used: 35785526
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)