Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000129-TA|BGIBMGA000129-PA|IPR002108|Actin-binding,
cofilin/tropomyosin type
         (113 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   2.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   6.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   6.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   6.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   6.9  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    19   9.1  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    19   9.1  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
          5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 10 TVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAE 52
          T+S  CK        +  H+ V F +++   ++    G    E
Sbjct: 31 TISQGCKACGYHSPLESNHKLVTFILKNPPNLNPAVQGSSLTE 73


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 22   IKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGE 67
            +KK KK       + +EK+   E   +R A+ +  L  LQ GGT +
Sbjct: 1066 VKKTKKE------LEEEKKQAEEA--KRKAKQKSLLGFLQSGGTSD 1103


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 22   IKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGE 67
            +KK KK       + +EK+   E   +R A+ +  L  LQ GGT +
Sbjct: 1066 VKKTKKE------LEEEKKQAEEA--KRKAKQKSLLGFLQSGGTSD 1103


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 22   IKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGE 67
            +KK KK       + +EK+   E   +R A+ +  L  LQ GGT +
Sbjct: 1066 VKKTKKE------LEEEKKQAEEA--KRKAKQKSLLGFLQSGGTSD 1103


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 22   IKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGE 67
            +KK KK       + +EK+   E   +R A+ +  L  LQ GGT +
Sbjct: 1066 VKKTKKE------LEEEKKQAEEA--KRKAKQKSLLGFLQSGGTSD 1103


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 85  SEASKKQKLFLMSWCP 100
           S+ SK+ + FL+ W P
Sbjct: 154 SKKSKQVEYFLIHWYP 169


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 85  SEASKKQKLFLMSWCP 100
           S+ SK+ + FL+ W P
Sbjct: 154 SKKSKQVEYFLIHWYP 169


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,851
Number of Sequences: 317
Number of extensions: 978
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 113
length of database: 114,650
effective HSP length: 49
effective length of query: 64
effective length of database: 99,117
effective search space:  6343488
effective search space used:  6343488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)