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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000129-TA|BGIBMGA000129-PA|IPR002108|Actin-binding,
cofilin/tropomyosin type
         (113 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id...    93   4e-20
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id...    91   2e-19
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id...    87   2e-18
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id...    84   2e-17
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s...    84   2e-17
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id...    83   3e-17
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s...    83   4e-17
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (...    83   4e-17
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s...    82   1e-16
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s...    77   4e-15
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id...    74   3e-14
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id...    73   5e-14
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s...    70   3e-13
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s...    63   4e-11
At3g03290.1 68416.m00326 universal stress protein (USP) family p...    31   0.14 
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ...    29   0.96 
At1g71270.1 68414.m08225 Vps52/Sac2 family protein similar to SP...    27   3.9  
At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family prot...    27   3.9  
At2g18630.1 68415.m02169 expressed protein unusual splice site a...    26   6.8  
At5g61560.1 68418.m07725 protein kinase family protein contains ...    25   9.0  
At2g45650.1 68415.m05676 MADS-box protein (AGL6)                       25   9.0  

>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
           identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
           (ADF-4) (AtADF4) {Arabidopsis thaliana}
          Length = 139

 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 9/108 (8%)

Query: 6   ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 64
           ASG+ V D CK  + E+K  + HR++V+ I + +KQ+ VE VGE    YE F   L    
Sbjct: 5   ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP--- 61

Query: 65  TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
             ECRY ++DF++      T+E  +K K+F ++WCPD AKV+ KM+Y+
Sbjct: 62  ADECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYA 104


>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
           identical to SP|Q39250 Actin-depolymerizing factor 1
           (ADF-1) (AtADF1) {Arabidopsis thaliana}
          Length = 139

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 44/108 (40%), Positives = 68/108 (62%), Gaps = 9/108 (8%)

Query: 6   ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 64
           ASG+ V D CK  + E+K  + HR++V+ I + +KQ+ VE VG+    YE+F   L    
Sbjct: 5   ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 61

Query: 65  TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
             ECRY ++DF++      T+E  +K K+F ++WCPD AKV+ KM+Y+
Sbjct: 62  ADECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDIAKVRSKMIYA 104


>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
           identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
           (ADF-4) (AtADF4) {Arabidopsis thaliana}
          Length = 132

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 9/105 (8%)

Query: 9   VTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGTGE 67
           + V D CK  + E+K  + HR++V+ I + +KQ+ VE VGE    YE F   L      E
Sbjct: 1   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP---ADE 57

Query: 68  CRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
           CRY ++DF++      T+E  +K K+F ++WCPD AKV+ KM+Y+
Sbjct: 58  CRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYA 97


>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
           identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
           (ADF 3) (AtADF3) {Arabidopsis thaliana}
          Length = 139

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 39/108 (36%), Positives = 65/108 (60%), Gaps = 9/108 (8%)

Query: 6   ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 64
           ASG+ V D CK  + E+K  + HR++++ I + +KQ+ VE +GE    +E     L    
Sbjct: 5   ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61

Query: 65  TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
             ECRY +FDF++      +SE   + ++F ++W PDTA+V+ KM+Y+
Sbjct: 62  ADECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTARVRSKMIYA 104


>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
           strong similarity to SP|P30175 Actin-depolymerizing
           factor (ADF) {Lilium longiflorum}; contains Pfam profile
           PF00241: Cofilin/tropomyosin-type actin-binding protein
          Length = 140

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 11/109 (10%)

Query: 6   ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 63
           ASG+ VSD CK  + E+K  + +R++VF I DEK  Q+ ++ +G     YE F   + + 
Sbjct: 5   ASGMHVSDECKLKFLELKAKRNYRFIVFKI-DEKAQQVMIDKLGNPEETYEDFTRSIPED 63

Query: 64  GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
              ECRY ++D+++T     T E  +K K+F ++W PDT++V+ KMLY+
Sbjct: 64  ---ECRYAVYDYDFT-----TPENCQKSKIFFIAWSPDTSRVRSKMLYA 104


>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
           identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
           (ADF-6) (AtADF6) {Arabidopsis thaliana}
          Length = 146

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 9/107 (8%)

Query: 7   SGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQKGGT 65
           SG+ V+D  KTT+ E+++ K HRYVVF I   +K++ VE  G     Y+ FL  L     
Sbjct: 13  SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLP---D 69

Query: 66  GECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
            +CRY ++DF++      TSE  +K K+F  +W P T+ ++ K+LYS
Sbjct: 70  NDCRYAVYDFDFV-----TSENCQKSKIFFFAWSPSTSGIRAKVLYS 111


>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
           strong similarity to SP|P30175 Actin-depolymerizing
           factor (ADF) {Lilium longiflorum}; contains Pfam profile
           PF00241: Cofilin/tropomyosin-type actin-binding protein
          Length = 140

 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 11/109 (10%)

Query: 6   ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 63
           ASG+ V+D CK  + E+K  + +R++VF I DEK  Q+ +E +G     Y+ F   +   
Sbjct: 5   ASGMHVNDECKIKFLELKAKRTYRFIVFKI-DEKAQQVQIEKLGNPEETYDDFTSSIPDD 63

Query: 64  GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
              ECRY ++DF++T     T +  +K K+F ++W PDT++V+ KMLY+
Sbjct: 64  ---ECRYAVYDFDFT-----TEDNCQKSKIFFIAWSPDTSRVRSKMLYA 104


>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
           (ADF2) strong similarity to SP|Q9ZSK3
           Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
           {Arabidopsis thaliana}; contains Pfam profile PF00241:
           Cofilin/tropomyosin-type actin-binding protein
          Length = 137

 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 9/107 (8%)

Query: 6   ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 65
           ASG+ V D CK  + E+K  +  R +V+ I D KQ+ VE +GE    Y+ F   L     
Sbjct: 5   ASGMAVHDDCKLKFMELKAKRTFRTIVYKIED-KQVIVEKLGEPEQSYDDFAASLP---A 60

Query: 66  GECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
            +CRY ++DF++      T+E  +K K+F ++W PDTAKV+ KM+Y+
Sbjct: 61  DDCRYCIYDFDFV-----TAENCQKSKIFFIAWSPDTAKVRDKMIYA 102


>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
           strong similarity to pollen specific
           actin-depolymerizing factor 2 [Nicotiana tabacum]
           GI:22857914; contains Pfam profile PF00241:
           Cofilin/tropomyosin-type actin-binding protein
          Length = 137

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 39/107 (36%), Positives = 66/107 (61%), Gaps = 9/107 (8%)

Query: 6   ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 65
           ASG+ V D CK  + E+K  + +R+++F I D +Q+ VE +G     Y+ F   L     
Sbjct: 5   ASGMAVEDECKLKFLELKAKRNYRFIIFRI-DGQQVVVEKLGSPQENYDDFTNYLPPN-- 61

Query: 66  GECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
            ECRY ++DF++T     T+E  +K K+F ++W PD+++V+ KM+Y+
Sbjct: 62  -ECRYAVYDFDFT-----TAENIQKSKIFFIAWSPDSSRVRMKMVYA 102


>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
           strong similarity to pollen specific
           actin-depolymerizing factor 2 [Nicotiana tabacum]
           GI:22857914; contains Pfam profile PF00241:
           Cofilin/tropomyosin-type actin-binding protein
          Length = 130

 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 9/104 (8%)

Query: 9   VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGEC 68
           + V D CK  + E+K  + +R+++F I D +Q+ VE +G  +  Y+ F   L      EC
Sbjct: 1   MAVEDECKLKFLELKSKRNYRFIIFRI-DGQQVVVEKLGNPDETYDDFTASLP---ANEC 56

Query: 69  RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
           RY +FDF++      T E  +K K+F ++W PD+++V+ KM+Y+
Sbjct: 57  RYAVFDFDFI-----TDENCQKSKIFFIAWSPDSSRVRMKMVYA 95


>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
           identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
           (ADF 3) (AtADF3) {Arabidopsis thaliana}
          Length = 124

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 9/100 (9%)

Query: 6   ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 64
           ASG+ V D CK  + E+K  + HR++++ I + +KQ+ VE +GE    +E     L    
Sbjct: 5   ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61

Query: 65  TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAK 104
             ECRY +FDF++      +SE   + ++F ++W PDTA+
Sbjct: 62  ADECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTAR 96


>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
           identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
           (ADF-5) (AtADF5) {Arabidopsis thaliana}
          Length = 143

 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 33/110 (30%), Positives = 65/110 (59%), Gaps = 9/110 (8%)

Query: 4   LEASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQK 62
           +  +G+ V+D C +++ ++K  K HRY+VF I ++ +++ V+ VG     Y    + L  
Sbjct: 7   MATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLP- 65

Query: 63  GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
               +CRY +FDF++      T +  +K K+F ++W P+ +K++ K+LY+
Sbjct: 66  --VDDCRYAVFDFDFV-----TVDNCRKSKIFFIAWSPEASKIRAKILYA 108


>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
           similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
           (ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
           profile PF00241: Cofilin/tropomyosin-type actin-binding
           protein
          Length = 130

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 31/103 (30%), Positives = 62/103 (60%), Gaps = 9/103 (8%)

Query: 11  VSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGTGECR 69
           ++D CK ++ E+K  K HRYVV+ + ++ +++ V+ VG     Y+     L +    +CR
Sbjct: 1   MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPE---DDCR 57

Query: 70  YGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
           Y +FDF+Y      T +  +  K+F ++W P+ +++++KM+Y+
Sbjct: 58  YAVFDFDYV-----TVDNCRMSKIFFITWSPEASRIREKMMYA 95


>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
           similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
           (ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
           profile PF00241: Cofilin/tropomyosin-type actin-binding
           protein
          Length = 133

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 18/110 (16%)

Query: 9   VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETV------GERNAEYEQFLEDLQK 62
           + + D CK T+ E+K+ +  R +V+ I D  Q+ VE        GER   YE+F   L  
Sbjct: 1   MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLP- 59

Query: 63  GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
               ECRY + D E+            ++K+  ++W P TAK++KKM+YS
Sbjct: 60  --ADECRYAILDIEFV---------PGERKICFIAWSPSTAKMRKKMIYS 98


>At3g03290.1 68416.m00326 universal stress protein (USP) family
          protein contains Pfam profile: PF00582 universal stress
          protein family
          Length = 274

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 44 ETVGERNAEYEQFLEDLQKGGTGE 67
          ET G+  +EYE+F E+ ++GG GE
Sbjct: 45 ETDGDSTSEYEEFEEEKERGGEGE 68


>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain; ESTs gb|T44428 and gb|AA395440 come from this
           gene
          Length = 1218

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 7   SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 66
           S +T+ +A   T+ +I++ K   Y      +E ++D   V ER    +  LE+L K    
Sbjct: 676 SKLTIEEA---TFRDIQEKKMELYQAIVKFEEGKLDDSIVKERTEHIQSGLEELIKNLNE 732

Query: 67  ECR-YGL 72
            C+ YG+
Sbjct: 733 RCKQYGV 739


>At1g71270.1 68414.m08225 Vps52/Sac2 family protein similar to
           SP|P39904 SAC2 protein {Saccharomyces cerevisiae};
           contains Pfam profile PF04129: Vps52 / Sac2 family
          Length = 707

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 22  IKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQK 62
           + + K  ++V   I   K IDV   GE N EY + LE L K
Sbjct: 155 VAESKLAKFVEDIIVPPKMIDVIVDGEVNEEYMKTLEILSK 195


>At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family
          protein contains Pfam PF04073: YbaK / prolyl-tRNA
          synthetases associated domain; similar to 25.7 kDa
          protein (GI:7271117) [Cicer arietinum]
          Length = 307

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 24 KDKKHRYVVFYIRDEKQIDVETVGER 49
          KDKKHRY +     + ++D++ + +R
Sbjct: 51 KDKKHRYYIVSAMVDTKVDMKVLSQR 76


>At2g18630.1 68415.m02169 expressed protein unusual splice site at
           second intron; GA instead of conserved GT at donor site;
           similar to At14a GI:11994571 and GI:11994573
           [Arabidopsis thaliana]
          Length = 393

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 3   FLEASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQK 62
           + E++  T+ D C      + + ++ + ++ +  +  Q + E   + N +YE+ LE+L++
Sbjct: 117 YFESTAKTM-DFCSELENCLNRARRSQVIIQFAVN--QFEEENEDKENRKYEKTLEELKR 173

Query: 63  ---GGTGECR--YGLFDFEYTHQCQGTSEASK-KQKL 93
               G    +  + LFD  Y  Q     E  K K+KL
Sbjct: 174 FKVAGEPFTKEFFALFDLVYKQQVMMLEELHKLKRKL 210


>At5g61560.1 68418.m07725 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 796

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 38  EKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKL 93
           E++++ E   E   + +Q LED  +GG  + R     FE+    + TS  S + K+
Sbjct: 381 EERLEAEARAEEVRKEKQRLEDALEGGPLQ-RQQYMKFEWEEIVEATSSFSDELKI 435


>At2g45650.1 68415.m05676 MADS-box protein (AGL6)
          Length = 252

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 76  EYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKK 108
           E  ++C   S ++ K +    SWC +  K+K K
Sbjct: 67  ERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSK 99


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,911
Number of Sequences: 28952
Number of extensions: 103696
Number of successful extensions: 313
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 21
length of query: 113
length of database: 12,070,560
effective HSP length: 72
effective length of query: 41
effective length of database: 9,986,016
effective search space: 409426656
effective search space used: 409426656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)

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