GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000129-TA|BGIBMGA000129-PA|IPR002108|Actin-binding,
cofilin/tropomyosin type
         (113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    70   8e-14
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    35   0.004
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    25   2.2  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   2.2  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   2.9  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   2.9  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   2.9  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   3.8  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   3.8  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    24   5.1  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    24   5.1  
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    24   6.7  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    24   6.7  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    24   6.7  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    23   8.9  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    23   8.9  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    23   8.9  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    23   8.9  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 70.1 bits (164), Expect = 8e-14
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 9/106 (8%)

Query: 7   SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 66
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + +++ FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60

Query: 67  ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
           +CRY ++DFE+ +  +G      + K+  +SW PD A +K KM+YS
Sbjct: 61  DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYS 100


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 34.7 bits (76), Expect = 0.004
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 29  RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEAS 88
           R  +  I +E   DV+T+ E++   E    D +K    EC  G  +  +        + S
Sbjct: 26  RAAIISISNENSFDVKTMVEKSESIES---DFKK--VRECLLGSEEPAFVL----VYDDS 76

Query: 89  KKQKLFLMSWCPDTAKVKKKMLYS 112
           KK  L L+S+ P+ A V++KMLY+
Sbjct: 77  KKNLLQLISYVPENANVRRKMLYA 100


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 16  KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDF 75
           K + + ++ + K ++     +D K+ D + +  +  EY  F ++L+   TG+  Y   DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166

Query: 76  E 76
           +
Sbjct: 167 Q 167


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 18  TYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEY 77
           TY +I+K++K + +    + E+ ++ E +    A   + +    K  +   R  L   E 
Sbjct: 457 TYRKIRKNRKEKEMALIPKSEEDLENERIKSEEARALERMTQRHKNTSSWTRKML---ER 513

Query: 78  THQCQGTSEASKKQ 91
               +GT EA  +Q
Sbjct: 514 ASHGEGTREAVNEQ 527


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 10  TVSDACKTTYEEIKKDKKHRYV 31
           TV D C   +  IK   KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 9   VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 43
           VT  D  KT  +  +K  KH+ V  YIR  K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 2   KFLEASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDL 60
           K ++   +    A K  Y+    D+     + +  +E+ +DV    E+ +E  +F E L
Sbjct: 474 KLIDIGEIDFDQAFKICYDSNLLDEAKHLAIRFNNNERVLDVLVESEQYSEALRFFESL 532


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 36  RDEKQIDVETVGERNAEYEQFLEDLQKGGT 65
           RD+KQ DVE + E +A+     + +  GG+
Sbjct: 277 RDQKQQDVEALQEYSAKLSLERDKISSGGS 306


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 16  KTTYEEIKKDKKH-RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQK 62
           K TY + KK  ++ R     ++  + +  + +  +  +YE FL++L++
Sbjct: 399 KKTYPQTKKKNRNWRLKTIGMQKAEDVKKQDIERQERDYELFLQNLEE 446


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 73  FDFEYTHQCQGTSEASKKQKLFLMSW 98
           ++FE+  QC G+ + +    L ++SW
Sbjct: 350 YNFEHIRQCFGSRKLAISSILVILSW 375


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 27  KHRYVVFYIRDEKQIDVETVGE 48
           KH  + F++R  K  D+ T+GE
Sbjct: 236 KHAPIEFWLRMSKAADIFTIGE 257


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 25  DKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGG 64
           D+K    + Y++D  +  +E + ER  E    L     GG
Sbjct: 90  DEKGIPFILYVKDSAKKQLEKIAERKPEENSVLRVTVDGG 129


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 70  YGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKML 110
           Y   DFE    C    E   K   FL+S C    +  +K+L
Sbjct: 320 YTEVDFEKAQHCLRECEEVLKTDFFLVSLCDHFLEGARKLL 360


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 11  VSDACKTTYEEIKKDKKHRYV 31
           V D  KT YE+++KD   R V
Sbjct: 322 VRDGFKTQYEQLQKDVSRRAV 342


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
          8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 16 KTTYEEI-KKDKKHRYVVFYIRDEKQIDVET 45
          K  Y++I +K+  +     Y+++EKQID+ T
Sbjct: 4  KINYKDITQKEMFNEIFKEYVKEEKQIDLGT 34


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 67  ECRYGLFDFEYTHQCQGTSEAS 88
           E RYG+ DFE  H    +S A+
Sbjct: 302 ETRYGMGDFEARHLALDSSSAA 323


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 6   ASGVTVSDACKTTYEEIKK 24
           A+ +  +DACK+ +E IKK
Sbjct: 401 ANHLWTADACKSHFERIKK 419


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 3   FLEASGVTVSDACKTTYEEIKK 24
           FLE   +TV+D+    Y+EI++
Sbjct: 578 FLEYGNLTVNDSVVCEYDEIRR 599


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,997
Number of Sequences: 5004
Number of extensions: 20067
Number of successful extensions: 64
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 20
length of query: 113
length of database: 2,362,478
effective HSP length: 64
effective length of query: 49
effective length of database: 2,042,222
effective search space: 100068878
effective search space used: 100068878
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)