GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000129-TA|BGIBMGA000129-PA|IPR002108|Actin-binding,
cofilin/tropomyosin type
         (113 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       90   3e-19
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    90   3e-19
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       62   9e-11
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    62   9e-11
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    62   9e-11
Z81554-2|CAB04503.1|  351|Caenorhabditis elegans Hypothetical pr...    29   1.0  
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p...    28   1.8  
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    28   1.8  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    27   2.4  
Z96047-8|CAC42278.1|  507|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z96047-7|CAB09413.1|  561|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical pr...    26   5.5  
AL032639-4|CAA21636.2|  858|Caenorhabditis elegans Hypothetical ...    26   7.2  
Z48009-11|CAA88088.2|  467|Caenorhabditis elegans Hypothetical p...    25   9.5  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 3/110 (2%)

Query: 6   ASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK-- 62
           ASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K  
Sbjct: 2   ASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKLV 61

Query: 63  GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
               ECRY   D E T Q QG    S   K+  + +CPD A V+++MLY+
Sbjct: 62  EDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYA 111


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 3/110 (2%)

Query: 6   ASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK-- 62
           ASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K  
Sbjct: 2   ASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKLV 61

Query: 63  GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
               ECRY   D E T Q QG    S   K+  + +CPD A V+++MLY+
Sbjct: 62  EDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYA 111


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 19/124 (15%)

Query: 6   ASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN-------------- 50
           +SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++              
Sbjct: 2   SSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSSK 60

Query: 51  AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKK 108
           A +++F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD A +KKK
Sbjct: 61  AAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKK 119

Query: 109 MLYS 112
           M+Y+
Sbjct: 120 MVYA 123


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 19/124 (15%)

Query: 6   ASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN-------------- 50
           +SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++              
Sbjct: 2   SSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSSK 60

Query: 51  AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKK 108
           A +++F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD A +KKK
Sbjct: 61  AAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKK 119

Query: 109 MLYS 112
           M+Y+
Sbjct: 120 MVYA 123


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 19/124 (15%)

Query: 6   ASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN-------------- 50
           +SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++              
Sbjct: 2   SSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSSK 60

Query: 51  AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKK 108
           A +++F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD A +KKK
Sbjct: 61  AAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKK 119

Query: 109 MLYS 112
           M+Y+
Sbjct: 120 MVYA 123



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 80  QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 112
           Q    SE S K+   L++ CPD A V+++MLY+
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYA 171


>Z81554-2|CAB04503.1|  351|Caenorhabditis elegans Hypothetical
           protein F57G4.4 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 72  LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKK 108
           +F+ EY+   +GT E    +  +++  CPD+ ++ KK
Sbjct: 314 VFNPEYSGGVEGTFEFKANESNYVIKICPDSLQIDKK 350


>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
           protein R05D3.1 protein.
          Length = 1053

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 7   SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLE 58
           +G T  DA +  ++  K D++  ++    R E +I  E  G+    Y++F++
Sbjct: 543 TGTTDDDAIRMAFDRDKSDERKEWIR---RSENEITNEDDGKTEISYQEFVD 591


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 77  YTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 111
           + H   G+ E    + +F  S  PD+ K KKK+LY
Sbjct: 161 FIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 2   KFLEASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ 40
           KF++    +  D C  T  ++ ++  HRYV F +  EKQ
Sbjct: 909 KFIQKMIASALDLCSVTLNKLCRE--HRYVGFVLSKEKQ 945


>Z96047-8|CAC42278.1|  507|Caenorhabditis elegans Hypothetical
           protein DY3.4b protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 4   LEASGV---TVSDACKTTYEEIKKDKKHRYVVFYIRD 37
           LE SGV   T+ D+CK   + +KK+ ++  ++ Y  D
Sbjct: 243 LERSGVYRHTIRDSCKKVSDFLKKNSQNSKIIGYTAD 279


>Z96047-7|CAB09413.1|  561|Caenorhabditis elegans Hypothetical
           protein DY3.4a protein.
          Length = 561

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 4   LEASGV---TVSDACKTTYEEIKKDKKHRYVVFYIRD 37
           LE SGV   T+ D+CK   + +KK+ ++  ++ Y  D
Sbjct: 297 LERSGVYRHTIRDSCKKVSDFLKKNSQNSKIIGYTAD 333


>Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical
           protein T23F6.4 protein.
          Length = 872

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 18  TYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQK 62
           TYEE +K++K+R     I +E++ D E + E     E   ED +K
Sbjct: 585 TYEEKRKERKNRQQ--GITEEEKDDGEVIEEEEKPKEVEAEDKKK 627


>AL032639-4|CAA21636.2|  858|Caenorhabditis elegans Hypothetical
           protein Y38F1A.3 protein.
          Length = 858

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 48  ERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVK 106
           ++  E E FL+   KG  G   Y   DF  T QC+ +   S    +F       TA VK
Sbjct: 74  DKALEIEDFLQYKLKGSFGNQSYSYSDFCGT-QCETSDAVSIFLSMFRDQQIKKTAHVK 131


>Z48009-11|CAA88088.2|  467|Caenorhabditis elegans Hypothetical
           protein AH6.5 protein.
          Length = 467

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 35  IRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTH 79
           +++ +  D+ T    N    +  ++  +GG+G C YGL   E+ H
Sbjct: 301 LKELRASDIPTRYPNNKYKTKLCKNFARGGSGVCPYGL-RCEFVH 344


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,278
Number of Sequences: 27539
Number of extensions: 114795
Number of successful extensions: 363
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 16
length of query: 113
length of database: 12,573,161
effective HSP length: 72
effective length of query: 41
effective length of database: 10,590,353
effective search space: 434204473
effective search space used: 434204473
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)