GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000129-TA|BGIBMGA000129-PA|IPR002108|Actin-binding,
cofilin/tropomyosin type
         (113 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   1.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   8.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   8.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    20   8.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   8.2  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
          determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 14 ACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRY 70
          +C        K+K  RY   Y   EK ++  T  +R   Y +  E  QK    E +Y
Sbjct: 3  SCSKDRNREYKEKDRRYEKLYNEKEKLLEERTSRKR---YSRSREREQKSYKNERKY 56


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 77  YTHQCQGTSEASKKQKLFLMSWCP 100
           Y H+   T E S+  K+  + W P
Sbjct: 318 YHHRNADTHEMSEWVKVVFLYWLP 341


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 41  IDVETVGERNAEYEQFLEDLQKGGTGE 67
           +DV+ V E N E     E  QK G+ +
Sbjct: 292 LDVKDVEEGNVEETNSEETHQKDGSSD 318


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 41  IDVETVGERNAEYEQFLEDLQKGGTGE 67
           +DV+ V E N E     E  QK G+ +
Sbjct: 207 LDVKDVEEGNVEETNSEETHQKDGSSD 233


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 41  IDVETVGERNAEYEQFLEDLQKGGTGE 67
           +DV+ V E N E     E  QK G+ +
Sbjct: 526 LDVKDVEEGNVEETNSEETHQKDGSSD 552


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,133
Number of Sequences: 429
Number of extensions: 1221
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 113
length of database: 140,377
effective HSP length: 50
effective length of query: 63
effective length of database: 118,927
effective search space:  7492401
effective search space used:  7492401
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)