Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000128-TA|BGIBMGA000128-PA|undefined
(1364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 42 4e-04
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 33 0.27
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 33 0.36
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 31 0.84
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 29 3.4
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 29 4.5
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 29 5.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 5.9
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 29 5.9
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 29 5.9
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 29 5.9
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 28 7.8
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 28 7.8
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 28 7.8
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 42.3 bits (95), Expect = 4e-04
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 836 VIKNVLASSVKRVKANNEIVKKLVELIINKENKALNSIEGFREPAFQISCIILPLIAKQK 895
++ N+LAS K V N E ++ +L+ E KA N + +S + L
Sbjct: 728 IVSNILASLEKSVHKNYESLRS--QLL---EYKAANE----KHTEAILSVVSSTLTENTG 778
Query: 896 KALTTSAHRSILADLQDKLHRELLKAFKNIDFVNGSFVKNISGNTENSMVESNAATLNAM 955
K L + +S+ L++++ + A KN SF++N +NS+ E +++
Sbjct: 779 KILESVVEKSMQVALKEEIANSVRNALKNNLEKIESFLENSIAELQNSVREDFDKQTSSL 838
Query: 956 AAYTLTLSKYCEATKPDEA--NEMECVLKGLEFFVETSIRTIEEATSESQQIESS 1008
A ++ A K E NE+ +K LE +VET + + E++ E++
Sbjct: 839 AQLRYSIQNVAHAQKESEVKYNELNEQVKTLEGYVETVLEKFNDLKIENKVPETA 893
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 33.1 bits (72), Expect = 0.27
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 10/173 (5%)
Query: 882 QISCIILPLIAKQKKALTTSAHRSILADLQDKLHRELLKAFKNIDFVNGSFVKNISGNTE 941
Q+S +L A Q+K + S + + EL + K +F SF K IS +
Sbjct: 237 QLSDAVLEKDALQRKVSSLSQQFTESNLRYQNIVAELSEMRKQYEFSQVSFEKEISSQKQ 296
Query: 942 NSMV-----ESNAATLNAMAAYTLTLSKYCEATKPDEANEMECVLKGLEFFVETSIRTIE 996
S + E + L + L K EA + ++E K E +++ I +E
Sbjct: 297 ISELWMEKCEDCSLRLKELQNSNGELEKLLEAAQSSFEEQLESH-KEAEASLKSQINFLE 355
Query: 997 EATSESQQIESSLGLLNVMLRHIKKLDTHEMFKEK-DKLFSGIWRSLKTRLSI 1048
+ S +ES L L N LRH +++ +M + K L + + K + S+
Sbjct: 356 KEVSS---LESQLKLANERLRHYDEIEISDMSELKYSNLLNNSMKGFKGQSSV 405
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 32.7 bits (71), Expect = 0.36
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 964 KYCEATKPDEANEMECVLKGLEFFVETSIR-TIEEATSESQQIESSLGLL---NVMLRHI 1019
K+ E K E E E +LKG++ + S+R I E S SQ E LL +M ++
Sbjct: 49 KFLEVQKQKEDEEDEEILKGVDLTQQDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYL 108
Query: 1020 KKLDTHEMFKEKDKLFS 1036
K TH+ ++++L S
Sbjct: 109 KYRRTHKKESDENQLSS 125
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 31.5 bits (68), Expect = 0.84
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 583 LSYNPPLVLSFLKLCVSFAQLKLLNIKYSNYKLKIETSTSETF 625
L+ NPP ++F + V+F+Q + +KY+ KL +++S E +
Sbjct: 721 LNDNPPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENW 763
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 593 FLKLCVSFAQLKLLNIKYSNYKLKIETSTSETFDMSSILPCLNS 636
F++ VS +L ++ YS LK+ETST TF + LNS
Sbjct: 254 FIEKLVSKEELTRVHAFYSLNDLKLETSTINTFMWGRVQELLNS 297
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 507 LQKDFEEHCLMMLEEGFVSPSIITIAEVLAAILSSFLRYNKMADH 551
LQ + LM GFVS SI+ + I +FL ++KM +H
Sbjct: 121 LQLCLSDIYLMQSALGFVSDSIVDSMKAAYRIRKTFLSFSKMMEH 165
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 688 NYLTLETVKQIAKCFDNADSLSKAISKIDFTKSFCKKIDMKEYFLNITIPT 738
N L + ++K D +S SK I + F S K+D+ +F IPT
Sbjct: 1042 NIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFTNDIPT 1092
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 603 LKLLNIKYSNYKLKIETSTSETFDMSSILPCLNSAQWIDLMSKIKD 648
L+ LN+ KL + S + + P L+ QW+D+ K++D
Sbjct: 1964 LRALNVNTEKTKLILRPDKSIITKENHVWPNLDDQQWLDVEPKLRD 2009
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 184 LGTECSSDIIELCQNVMFPITRKSCYISYLQTLIRKDNINELMLEKGDNI 233
L + S+DI ELC N I++K+ + L+ + ++ ++ L +EK D +
Sbjct: 162 LARDLSNDIAELCSNHHNYISKKA-VLCALRVIQKEPDLESLYIEKTDEL 210
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 28.7 bits (61), Expect = 5.9
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 837 IKNVLASSVKRVKANNEIVKKLVELIINKENKALNSIEGFREPAFQ-ISCIILPLIAKQK 895
+KN L+ S+++ + E +K L+ ++ + LNS+ +EP Q + ILP A
Sbjct: 138 LKNQLSVSLRQHEQQMETLKGNYGLVKARKGRNLNSMLIVKEPIKQNTNAPILPETASFL 197
Query: 896 KALTTSAHRSILADLQDKLHRELLKAFKN-IDFVNGSFVKNISGNTENSMVE 946
+ + + L + +LLK N + NG+ + +SG T NS+VE
Sbjct: 198 Q--QNDENSNFLNSRVNNDEFQLLKGLNNELKKSNGTLLTCLSG-TLNSLVE 246
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.7 bits (61), Expect = 5.9
Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 6/160 (3%)
Query: 633 CLNSAQWIDLMSKIKDEETIVLYKQ----IAKTLIKRYSNNSDAKLFNDVTISNNRVLLN 688
CL A W L++K K + ++ Y Q +A L+++Y +++ F + +
Sbjct: 58 CLKHANWALLLAKKKSDTGLIGYCQSLRGLAYYLLEQYQSSAICFGFALKHLKKEDLTKW 117
Query: 689 YLTLETVKQIAKCFDNADSLSKAISKI-DFTKSFCKKIDMKEYFLNITIPTENFDTIKNY 747
+ L+++ I N D+ S + + + KI+ E FLN+++ KN
Sbjct: 118 QVQLDSMLTIVHEQQNQDTSSLIPDECPNIPELEAAKIEGDEEFLNMSLKAPEGQIEKNE 177
Query: 748 IELLKNLQVPYLDENYQLAV-IFVLLATKRNAGKKLRRNT 786
+L ++ + ++ L + I+ + + +NT
Sbjct: 178 EKLSNRIRYDWSQTSFSLNIDIYAKKVKDEDVSLLMEKNT 217
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 679 TISNNRVLLNYLTLETVKQIAKCFDNADSLSKAISKIDFTKSFCKKIDMKEYFLNITIPT 738
++ ++ L T K + DN L ++D+TKS CK+++ + L +
Sbjct: 639 SLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIELDYTKSNCKQMEEEMQVLREGHES 698
Query: 739 ENFDTIKNYIELLKNL 754
E D I+ + +L K L
Sbjct: 699 EIKDFIEEHSKLTKQL 714
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 115 TPQLNQHIDEYLKISITVLLCLKHEEQLNV 144
TP ID Y ISI V K +EQLN+
Sbjct: 1065 TPSQKSSIDNYTGISIRVSFNSKDDEQLNI 1094
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 507 LQKDFEEHCLMMLEEGFVSPSIITIAEVLAAILSSFLRYN-KMADHTVPFQISE 559
L ++F+ H L M++ SPS IT E++A + ++ + + MA+H Q E
Sbjct: 468 LHEEFQPHILDMMDSSTSSPSYITEPELIALMDANGIGTDATMAEHIEKVQERE 521
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.135 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,895,206
Number of Sequences: 5004
Number of extensions: 244685
Number of successful extensions: 796
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 18
length of query: 1364
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1282
effective length of database: 1,952,150
effective search space: 2502656300
effective search space used: 2502656300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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