Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000128-TA|BGIBMGA000128-PA|undefined
(1364 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954... 32 2.8
05_06_0073 - 25368946-25369245,25369732-25370544 32 3.7
05_06_0072 + 25364218-25365021,25365374-25365673 32 3.7
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 31 4.8
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738... 31 4.8
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 31 8.5
11_04_0097 + 13448740-13450725 31 8.5
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 31 8.5
>05_03_0460 - 14294931-14295110,14295200-14295234,14295358-14295457,
14295548-14295669,14296272-14296367,14296489-14298949
Length = 997
Score = 32.3 bits (70), Expect = 2.8
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 958 YTLT--LSKYCEATKPDEANEMECVLKGLEFFVETSIRTIEEATSESQQIESSLGLLNVM 1015
YTLT L YC A +PD+AN++ + L + E + T+ A S+ +++ ++ LL M
Sbjct: 212 YTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMVAFSKWGKVDGAVELLGSM 271
>05_06_0073 - 25368946-25369245,25369732-25370544
Length = 370
Score = 31.9 bits (69), Expect = 3.7
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 630 ILPCLNSAQWIDLMSKIKDEETIVLYKQIAKTLIKRYSNNSDA--KLFNDVTISNNRVLL 687
++P L +W+ + +E+ ++KQ + + A L ND +S++RV++
Sbjct: 134 VVPFLGVGEWLRRDREPPEEDPYCIFKQAHGRSLWELAGRDAAFDALINDGMVSDSRVIM 193
Query: 688 NYLTL---ETVKQIAKCFDNADSLSKAISKID--FTKSFCKKIDM 727
+Y+ E + IA D A L A I F + C +D+
Sbjct: 194 DYVVREHGEVFRGIASLVDLAGGLGAAAQVISKAFPEVRCSVMDL 238
>05_06_0072 + 25364218-25365021,25365374-25365673
Length = 367
Score = 31.9 bits (69), Expect = 3.7
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 630 ILPCLNSAQWIDLMSKIKDEETIVLYKQIAKTLIKRYSNNSDA--KLFNDVTISNNRVLL 687
++P L +W+ + +E+ ++KQ + + A L ND +S++RV++
Sbjct: 131 VVPFLGVGEWLRRDREPPEEDPYCIFKQAHGRSLWELAGRDAAFDALINDGMVSDSRVIM 190
Query: 688 NYLTL---ETVKQIAKCFDNADSLSKAISKID--FTKSFCKKIDM 727
+Y+ E + IA D A L A I F + C +D+
Sbjct: 191 DYVVREHGEVFRGIASLVDLAGGLGAAAQVISKAFPEVRCSVMDL 235
>12_01_1116 + 11914352-11914415,11915049-11915158,11915254-11915295,
11916263-11916430,11916506-11916682,11916848-11917051,
11917125-11917319
Length = 319
Score = 31.5 bits (68), Expect = 4.8
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 1110 HKVSRYIWAQCLKANIVGPKCAALTKVIARSCKSLRFWLRQHYEWDSVASKKRKKIDLYD 1169
++VS++IW + + + K +A+ SC ++ H+ +A K + ++
Sbjct: 68 YRVSKFIWLKEFRE--IKDKSSAINHDTGVSCDLAEMIMKWHHPGQKMAVGKPEYKEII- 124
Query: 1170 ERNVKIVRIEDKICEIIKINMDNLSEVILSAKKMSL 1205
ER++ + + D+I + + NL V++ +KM L
Sbjct: 125 ERSLSVPCMFDEIVMEVMWGLKNLMHVLVPQEKMKL 160
>01_07_0053 + 40772966-40773080,40773484-40773578,40773730-40773843,
40773984-40774088,40774179-40774250,40774293-40774346,
40774507-40774619,40774705-40774839,40774941-40775009,
40775140-40775227,40775327-40775398,40775476-40775576,
40775836-40775953,40776054-40776113,40776206-40776316,
40776499-40776573,40776821-40776854,40777453-40777805,
40778154-40778222,40778526-40778762
Length = 729
Score = 31.5 bits (68), Expect = 4.8
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 1028 FKEK-DKLFSGIWRSL--KTRLSIVFSGKASASCLDDGLATLRSVCESMSVECFVANVAE 1084
F EK D + + WR KTRL +FS K S D V E E +V +
Sbjct: 203 FMEKVDMIIARAWRWFLEKTRLQKLFSRKKSVRPKTDSKKNDDLVGEEEDKELYVERIRL 262
Query: 1085 ELMNLSL 1091
E MNLSL
Sbjct: 263 ETMNLSL 269
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 30.7 bits (66), Expect = 8.5
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 602 QLKLLNIKYSNYKLKIETSTSETFDMSSILPCLNSAQWIDLMSKIKDEETIVLYKQIAKT 661
+LK NI + ET E D S++ L S Q I L++++ +E +Q +
Sbjct: 957 ELKAANIHILQTCRQSETMQRELSDARSVIEALESQQ-IMLINEL--DELKESNQQSLEH 1013
Query: 662 LIKRYSNNSDAKLFNDVTISNNRVLLNYLTLETVK-QIAKCFDNADS-LSKAISKIDFTK 719
L KR S +L N++ + + +L +E K Q+ KCF+N DS L + ++ +
Sbjct: 1014 LKKRDLEIS--RLNNELDVHRRQ---EFLAMEEPKVQLLKCFENDDSPLQTKLKRMQASL 1068
Query: 720 SFCKKIDMK 728
+K++ +
Sbjct: 1069 EKARKLNTR 1077
>11_04_0097 + 13448740-13450725
Length = 661
Score = 30.7 bits (66), Expect = 8.5
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 947 SNAATLNAMAAYTLTLSKYCEATKPDEANE-MECVLKGLEFFV--ETSIRTIEEATSESQ 1003
+ A+ +A Y L L YC+ +PD A E +LK + T+ R + + +E+
Sbjct: 164 TQASVAPTVATYNLLLQAYCDCRRPDTALEHFRLLLKDDSPVLPSPTTYRILARSLAENG 223
Query: 1004 QIESSLGLLNVML 1016
++E ++ L + ML
Sbjct: 224 KLEQAIELKDGML 236
>01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 30.7 bits (66), Expect = 8.5
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 17/149 (11%)
Query: 894 QKKALTTSAHRSILADLQDKLHRELLKAFKNIDFVNGSFVKNISGNTENSMVESNAATLN 953
Q++ TS + + + +D L +ELL FK ++ + V TLN
Sbjct: 585 QEELEATSNELASIVEARDNLKKELLDVFKKLESTSQELVDE----------RKTVTTLN 634
Query: 954 -AMAAYTLTLSKYCEATKPDEANEMECVLKGLEFFVETSI---RTIEEATSESQQIESSL 1009
+ A L EA K EA +++ K L+ +++ + +EE S +E+
Sbjct: 635 RELEALVKQLQMDSEARKALEA-DLDEATKSLDEMNRSALSLSKELEETNSRKDTLEAEK 693
Query: 1010 GLLNVMLRHIKKLDT--HEMFKEKDKLFS 1036
+L+ L +K+ T HE ++ L S
Sbjct: 694 KMLSKALAEQQKITTEAHENTEDAQNLIS 722
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.135 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,862,827
Number of Sequences: 37544
Number of extensions: 1285664
Number of successful extensions: 3208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3206
Number of HSP's gapped (non-prelim): 11
length of query: 1364
length of database: 14,793,348
effective HSP length: 91
effective length of query: 1273
effective length of database: 11,376,844
effective search space: 14482722412
effective search space used: 14482722412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 66 (30.7 bits)
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