GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000128-TA|BGIBMGA000128-PA|undefined
         (1364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   36   0.30 
SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0)             34   0.91 
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           34   0.91 
SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   2.1  
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   2.1  
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   2.8  
SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   3.7  
SB_46612| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   3.7  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   4.8  
SB_5070| Best HMM Match : TPR_2 (HMM E-Value=1.4e-13)                  31   6.4  
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   8.5  

>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 35.5 bits (78), Expect = 0.30
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 604 KLLNIKY----SNYKLKIETSTSETFDMSSILPCLNSAQWIDLMSKIKDEETIVLYKQIA 659
           K  NI+Y    SNY + +   + +         C++S  ++ L++ + D++  + Y++  
Sbjct: 571 KTFNIQYGMCISNYMILLNLLSDQDIQYGM---CISS--YMILLNLLSDQD--IQYEKCI 623

Query: 660 KTLIKRYSNNSDAKLFNDVTISNNRVLLNYLTLETVKQIAKCFDNADSLSKAISKIDFTK 719
              +   +  SD  +     ISN  +LLN L+ + + Q  KC  N   L   +S  D   
Sbjct: 624 SNYVILLNLLSDQDIQYGKCISNYMILLNLLSDQNI-QYGKCISNYVILLNLLSDQDIQY 682

Query: 720 SFCKKIDMKEYFL 732
             C+   MK  FL
Sbjct: 683 GMCRSNYMKLIFL 695


>SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0)
          Length = 876

 Score = 33.9 bits (74), Expect = 0.91
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 634 LNSAQWIDLMSKI---------KDEETIVLYKQIAKTLIKRYSNNSDAKLFNDVTISNNR 684
           +NS  W+D  +KI         KDE     Y +  K  IKR+       + N+   +N  
Sbjct: 632 VNSIPWMDKTTKIAVSEKADSMKDEVGYPAYLKGGKKFIKRFKKYKGVTMKNNALFANRI 691

Query: 685 VLLNYLTLETVKQIAKCFDNADSLS 709
            +L       +K++ K  D  DSLS
Sbjct: 692 AILKMAHKRMLKKLRKPVDKEDSLS 716


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 33.9 bits (74), Expect = 0.91
 Identities = 17/70 (24%), Positives = 35/70 (50%)

Query: 431 LSQILPYIKNNLEDSNTEQFELKQSVTACLENGTDCENLMKKIINGNDIFPEECVESYGK 490
           +++ L  I NN      +Q + + + T  L N  + + + K +IN N+  P +  + Y  
Sbjct: 742 ITKTLININNNNPTQQQKQQQQQSTTTNTLNNNKNTQQITKTLININNNNPTQQQQPYSS 801

Query: 491 YTSELMFRQN 500
             + ++FRQ+
Sbjct: 802 MQTTILFRQD 811


>SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 60/280 (21%), Positives = 120/280 (42%), Gaps = 27/280 (9%)

Query: 903  HRSILADLQDKLHRELLKAFKNIDFVNGSFVK---NISGNTENSMV-ESNAATLNAMAAY 958
            +R I+ +L+++LH E ++   +I  +  S      N+    E +++ +  +A       Y
Sbjct: 150  YRDIVKELEERLH-ETIEGRDHILALRESEAASQLNLVKQLEAALLKQKQSAADKDQLEY 208

Query: 959  TLTLSKYCEATKPDE-ANEMECVLKGLEFFVETSIRTIEEATSESQQIESSLGLLNVMLR 1017
             +  SK    TK ++ +N+ E  +  L+   +   + ++ A S S      L  L   L+
Sbjct: 209  DIQSSKSDSQTKMEKLSNDYEARITNLK---DDHSKALDIAASRSASARDDLDQLQQQLK 265

Query: 1018 HIKKLDTHEMFKEKDKLFSGIWRSLKTRLSIVFSGKASAS-CLDDGLATLRSVCESMSVE 1076
            HIK+    E+    DK+     +SL+  L  V   K   S   +   +T  +      VE
Sbjct: 266  HIKEQHITEISAMDDKM-----KSLRLELESVSKQKNDLSKQFETQSSTFENTSRETQVE 320

Query: 1077 CFVANVAEELMNLSLLKKPA--IMLKDKSNG---DLTS--HKVSRYIWAQCLKANIVGPK 1129
              +    +E + +S  ++ A  I+L+++      +L S  H++   +  +    N+   +
Sbjct: 321  LNLIRKEKEQLQVSASREQANSIILQERLTSCEQELASERHRLQELMEEKKAFENVKSEE 380

Query: 1130 CAALTKVI--ARSC---KSLRFWLRQHYEWDSVASKKRKK 1164
               L   +  ARS    K   F+ +   E   VAS++++K
Sbjct: 381  ITKLNNEVREARSLLQQKEQEFYQQAEQEMRRVASEEQEK 420


>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1868

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 333  LTDTFGEKISKVEIKKNFMSFLQAVMMGQLKLDGKPD-KATMNIIKTALKLDPTLIEQKL 391
            +T       SKV   KN+ + L  V     K+  +   K     +KT  KL   LI +K 
Sbjct: 1193 ITHFLSNDSSKVRFYKNYNNKLNRVKEAAKKVYFENQFKLNSGNLKTTWKLIGLLINRKN 1252

Query: 392  TVILPPIMTAKKHNAYKCYVDMLS 415
            +  LPPI     +N  KCY D  S
Sbjct: 1253 STSLPPIAKLIYNN--KCYTDKAS 1274


>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 32.3 bits (70), Expect = 2.8
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 328 DISIRLTDTFGEKISKVEIKKNFMSFLQAVMMGQLKLDGKPDKATMNIIKTALKLDPT-- 385
           D S+ L   F    S  E KK+F+ F   +    +KL+         +    +KL  T  
Sbjct: 773 DYSLLLPTRFSSFASAPEYKKHFLRFFCTLTANLVKLEDDVVHKERLLSSLEVKLQQTRN 832

Query: 386 -LIEQKLTVILPPIMTAKKHNA-YKCYVDMLSCLMEMLFKLSRGIPFLSQILPYIKNNLE 443
            L+E +  V    +  A    A + CYV M       L    R + F S IL   ++ L+
Sbjct: 833 SLVESQEEVC--SLKGADIQTATFVCYVYMCKVGGLTLCSSYRSLLFSSDILSSTEHQLQ 890

Query: 444 DSNTEQFELKQSV 456
           +  T+  EL++ V
Sbjct: 891 EDKTKIRELEEQV 903


>SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 31.9 bits (69), Expect = 3.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 455 SVTACLENGTDCENLMKKIINGNDIFPEECVESYGK 490
           SVT+   +G  CE+ ++K  N  D++P  CV S G+
Sbjct: 451 SVTSASRSGRACEDEIEKEWNEQDLYPAFCVHSAGQ 486


>SB_46612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 31.9 bits (69), Expect = 3.7
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 635 NSAQWIDLMSKIKDEETIVLYKQIAKTLIKRYSNNSDAKLFNDVTISNNRVLLNYLTLET 694
           N ++W+DL SKI+DE+   L   + +  I++Y  N   +    V      + ++ +  E 
Sbjct: 8   NPSEWLDLRSKIEDEKFRQLSADLERRRIRKY--NFHLEELQKVQNELKNLQIDRMRFER 65

Query: 695 VKQIAKCFDNADSLSKAISKIDFT 718
            K + K   N  SL+K   KI  T
Sbjct: 66  EKLLRK--RNIASLAKERKKISKT 87


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 841  LASSVKRVKANNEIVKKLVELIINKENKALNSIEGFREPAFQISCIILPLIA-KQKKALT 899
            L   VK+ + + + VK+LV+ II + +    S          +   I  L+A KQK    
Sbjct: 1676 LKGEVKKAQDDADSVKRLVDAIIEENDTLKQSEHDLLAIQEDLEHTIDELVAEKQKLIQE 1735

Query: 900  TSAHRSILADLQDKLHRELLKAFKNIDFVNGSFVKNISGNTENSMVESNAATLNAMAAYT 959
             SA  S L   ++++++ + K  +  + ++ SF+      TEN +  S   T+N +    
Sbjct: 1736 NSALVSSLHAEKEEMYKTIEKLQQERNMLHESFIA-----TENDLEISIKETVN-LEKQV 1789

Query: 960  LTLSKYCEATKPDEANEMECVLKGLEFFVETSIRTIEEA 998
              LS+     K +    ++ +++  E  +ET  + +E A
Sbjct: 1790 EMLSRESSTMKQEAEERIKKLIELEEKAIETMEKKLEIA 1828


>SB_5070| Best HMM Match : TPR_2 (HMM E-Value=1.4e-13)
          Length = 732

 Score = 31.1 bits (67), Expect = 6.4
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 459 CLENGTDCENLMKKIINGNDIFPEECVESYGK-YTSELMFRQNKEVLE-LLQKDFEEHC 515
           C++   DC N + K++N     P EC++ Y K + S +  +  K V E L+   F   C
Sbjct: 389 CIDTFNDCVNTLGKVLN-----PNECLKLYKKLHKSAVEMKDEKRVSECLISVGFRHMC 442


>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1801

 Score = 30.7 bits (66), Expect = 8.5
 Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 882  QISCIILPLIAKQKKALTTSAHRSI--LADLQDKLHRELL-KAFKNIDFVNGSFVKNI-S 937
            Q+  I L LI +  K +TT+A  S     +   K  R LL KA+  ID VN     ++  
Sbjct: 1143 QMDGIYLGLIEELLKLVTTTAQYSEQQTQETAKKFWRALLHKAYDIIDKVNQLLPTSVFI 1202

Query: 938  GNTENSMVESNAAT-LNAMAAYTLTLSKYCEATKPDEANEMECVLKGLEFFVETSIRTIE 996
            G  +  +V  N      AM      L+ Y    +P++ NE+  ++  L  FVE    + E
Sbjct: 1203 GVIQRLLVNDNVTVRRKAMELLNAKLAHY--TIQPNQVNELLDLVNDLVAFVEGRC-SGE 1259

Query: 997  EATSESQQIESSLGLLNVML 1016
            E     Q    SL LL  +L
Sbjct: 1260 ETAVNRQTALYSLKLLARLL 1279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,956,629
Number of Sequences: 59808
Number of extensions: 1590444
Number of successful extensions: 3939
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3931
Number of HSP's gapped (non-prelim): 18
length of query: 1364
length of database: 16,821,457
effective HSP length: 91
effective length of query: 1273
effective length of database: 11,378,929
effective search space: 14485376617
effective search space used: 14485376617
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 66 (30.7 bits)