GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000127-TA|BGIBMGA000127-PA|IPR002478|PUA
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces...   244   8e-66
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    30   0.17 
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    26   2.8  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   2.8  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   3.7  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   4.9  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   6.5  
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual       25   8.6  

>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score =  244 bits (596), Expect = 8e-66
 Identities = 105/179 (58%), Positives = 140/179 (78%)

Query: 1   MKVLSEDRTRILFEKLTKYIGVNVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKP 60
           M+ L+ + T+  FEKL +YIG N+  LIDRPD  +CFR +KDRVYY+SE+ + +A +V  
Sbjct: 1   MRPLTHEETKTFFEKLAQYIGKNITHLIDRPDDPHCFRLQKDRVYYVSERAMKMATSVAR 60

Query: 61  DNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGR 120
            NL+S G CFGKFTKTNKFRLHITAL YI+ YA +K+WVK + E  FLYG+H++K+ +GR
Sbjct: 61  QNLMSLGICFGKFTKTNKFRLHITALDYIAQYARYKIWVKSNGEMPFLYGNHVLKAHVGR 120

Query: 121 ITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRHADPLATIVFHQADVGEYIRSEDTL 179
           IT++TP+HQGVV+ +M+D P+GFGV +R+T E R  +P A + FHQADVGEY+R EDTL
Sbjct: 121 ITDDTPQHQGVVIYSMNDTPLGFGVTARSTLELRRLEPTAIVAFHQADVGEYLRDEDTL 179


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 96  KVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRH 155
           ++ VK SA     YG  ++  GL R       ++ +V++T     I  G+A  +T E   
Sbjct: 273 RIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIVLITTKGEAIAVGIAQMSTVELST 332

Query: 156 AD 157
            D
Sbjct: 333 CD 334


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 118 LGRITENTPKHQGVVVLTMSDIPIGFGVASR 148
           LGR TE T +H   + L ++ I  GF VA++
Sbjct: 495 LGRYTEWTAQHSEFLELQLNYISAGFEVANK 525


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 31  PDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYIS 90
           PD T  F   K  V Y+SE L+    +V    +  +     +  + N FRL  T L  ++
Sbjct: 346 PDSTLVFVPTKHHVEYVSELLVQAGYSV--SKIYGSLDQEARLNEINNFRLGKTNLLVVT 403

Query: 91  PYA 93
             A
Sbjct: 404 DVA 406


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 47  ISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAE 104
           +S K L  +  VKP +  + G  FG  T TN F       ++ +   P  V  + S E
Sbjct: 361 LSSKKLPASSDVKPPSAAAVGFSFG--TTTNPFSFAAPKSSFPTSSTPASVGAEKSEE 416


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 63  LVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLY 109
           L++ G  + K  K     L I A +Y   Y   KVW  P+    +LY
Sbjct: 338 LLACGATYTKDLKPTNTLL-IAASSYGQKYGAAKVWNIPTVHHSWLY 383


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 48   SEKLLHLAQTVKPDNLVSAGTCFGKFTKTNK 78
            S++ +H   TV P  LV     F KF   N+
Sbjct: 1105 SKEYMHTVSTVNPKWLVEVAPTFFKFANANQ 1135


>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 111 HHIIKSGLGRITENTPKH 128
           HH+ K G+GR+ E   +H
Sbjct: 216 HHVDKYGIGRVVEMAMEH 233


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,129
Number of Sequences: 5004
Number of extensions: 32605
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 8
length of query: 180
length of database: 2,362,478
effective HSP length: 69
effective length of query: 111
effective length of database: 2,017,202
effective search space: 223909422
effective search space used: 223909422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)